Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq2170 84.2 2e-11 >seq2170 Length=2407512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 111780 AGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACC 111839 ||| |||||||||||||| || || | || |||||| |||||||| || || || || Sbjct 1141098 AGTAATGTGTGCAATCATATACGTCAATAATGAGTAACTTGCAATGTTGAAAGGAACTCC 1141157 Query 111840 TAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATA 111899 || || | |||| | || |||||||| ||||| || || |||| | | ||||| Sbjct 1141158 AAGACCAACATCTGCTGACCTTTGATAGAGCTGGCAAGAAAGTTCTCCATTAGCAACATA 1141217 Query 111900 AAATTG-ACAAAGTACA-TGACAAGGAGGCAATGCCATC 111936 ||| || || || ||| |||||||| || || |||||| Sbjct 1141218 AAACTGAACCAA--ACAGTGACAAGGTGGTAAAGCCATC 1141254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 111780 AGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACC 111839 ||| |||||||||||||| || || | || |||||| |||||||| || || || || Sbjct 1148792 AGTAATGTGTGCAATCATATACGTCAATAATGAGTAACTTGCAATGTTGAAAGGAACTCC 1148851 Query 111840 TAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATA 111899 || || | |||| | || |||||||| ||||| || || |||| | | ||||| Sbjct 1148852 AAGACCAACATCTGCTGACCTTTGATAGAGCTGGCAAGAAAGTTCTCCATTAGCAACATA 1148911 Query 111900 AAATTG-ACAAAGTACA-TGACAAGGAGGCAATGCCATC 111936 ||| || || || ||| |||||||| || || |||||| Sbjct 1148912 AAACTGAACCAA--ACAGTGACAAGGTGGTAAAGCCATC 1148948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391897038675058