Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1538 98.7 1e-15 >seq1538 Length=1185135 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||| ||||| || | | ||||||||||||||||| || || || ||||| || || Sbjct 145098 AGTAAAAATATATCTGGGACTTGCAGCATCCTTGCCTCCTTGCAGCCGTGTACCAAACTG 145157 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | ||||||||| | ||||||| ||||||||||||||||| || || | Sbjct 145158 ACCAATGGGTTGCAAGAGGTTAATGTTGTTGCTTCCCACAAAGTTTTGAGCTAAATTTAT 145217 Query 117424 AATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAG 117481 ||| || || || | | ||| ||||| ||||| || | ||||| || || | Sbjct 145218 AATGGTGGACATT--AACGACATCTCTCCATGATGATAGGCTGAATGCTCAGCAACTGAA 145275 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTCT 117508 || || ||||| || || || || ||| Sbjct 145276 CCTGCTAGCTGTGCAACTTTAATTTCT 145302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || || || |||| || || || ||||||||||| ||| |||||| || |||||||| Sbjct 145099 GTAAAAATATATCTGGGACTTGCAGCATCCTTGCCTCCTTGCAGCCGTGTACCAAACTGA 145158 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | |||||| | ||||||| ||||| || || ||||| ||||| | | Sbjct 145159 CCAATGGGTTGCAAGAGGTTAATGTTGTTGCTTCCCACAAAGTTTTGAGCTAAATTTATA 145218 Query 152149 ATCGTG 152154 || ||| Sbjct 145219 ATGGTG 145224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547146462526800