Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3560 163 3e-35 seq1460 140 4e-28 seq7337 102 9e-17 seq615 95.1 1e-14 >seq3560 Length=1522174 Score = 163 bits (180), Expect = 3e-35 Identities = 149/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| || ||||||||||| || || |||||| | | Sbjct 965389 ATGCAGATCTTCGTCAAGACCCTTACAGGGAAGACTATTACCCTCGAAGTTGAGCCTTCT 965448 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| |||||||||||||||| || ||||||||||| || || ||||| Sbjct 965449 GATACAATTGAAAATGTGAAGGCTAAAATTCAAGATAAGGAGGGAATCCCGCCCGACCAA 965508 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| |||||| | || |||| || || || ||||||| || Sbjct 965509 CAGAGACTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGCACACTTTCAGACTACAAC 965568 Query 27586 GTCCAAAA 27593 | ||||| Sbjct 965569 ATTCAAAA 965576 Score = 145 bits (160), Expect = 9e-30 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || || ||||| |||||||| || || || | Sbjct 967773 ATGCAAATCTTTGTCAAGACACTCACTGGAAAGACAATTACTCTGGAAGTGGAACCTTCA 967832 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| ||||||||||| || ||||| || |||||| Sbjct 967833 GACACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAGGAAGGCATTCCACCTGACCAG 967892 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||||||||| || || ||||||| || || || |||| || || Sbjct 967893 CAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGAACACTCTCAGATTACAAC 967952 Query 27586 GTCCA-AAAGGAATCCACTCTTCAT 27609 |||| ||||| || || |||||| Sbjct 967953 ATCCAGAAAGGTATGCAGACTTCAT 967977 Score = 129 bits (142), Expect = 7e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| ||||| || ||||| || || |||||||| ||||| || || || Sbjct 965989 AATGCAGATCTTCGTCAAAACTCTTACGGGAAAAACTATTACCCTTGAAGTGGAACCATC 966048 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | ||||| || || ||||||||||| || ||||| || ||||| Sbjct 966049 AGACACTATTGAAAACGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCACCTGACCA 966108 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||||||||| || || ||||||| | || || | || ||||| Sbjct 966109 GCAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCAGAACTCTTTCTGATTATAA 966168 Query 27585 TGTCCAAAAGG 27595 ||||||||| Sbjct 966169 CATCCAAAAGG 966179 Score = 120 bits (132), Expect = 3e-22 Identities = 142/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| ||||| || ||||| || || |||||||| ||||| || || || Sbjct 972961 AATGCAGATCTTCGTCAAAACTCTTACGGGAAAAACTATTACCCTTGAAGTGGAACCATC 973020 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | ||||| || || || |||||||| || ||||| || ||||| Sbjct 973021 AGATACGATTGAGAATGTTAAGGC-AAGATCCAAGACAAGGAAGGCATTCCACCTGACCA 973079 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||||||||| || || ||||||| || || || |||| || || Sbjct 973080 GCAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGAACACTCTCAGATTACAA 973139 Query 27585 TGTCCAAAAGG 27595 | || |||| Sbjct 973140 CATTCAGAAGG 973150 >seq1460 Length=1689650 Score = 140 bits (154), Expect = 4e-28 Identities = 148/194 (76%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || | || || || || || || |||||||||||| ||| Sbjct 1136790 ATGCAGATTTTCGTAAAAACCTTAACGGGTAAAACGATAACCCTTGAGGTTGAGCCAGCG 1136731 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| ||||||||||||||||||| || || |||||||| || |||||| Sbjct 1136730 GACACCATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCTGACCAG 1136671 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || ||||| ||||| |||||||| || |||| | || || |||| || ||| Sbjct 1136670 CAAAGGCTTATTTTCGCTGGAAAGCAACTTGAAGATGGGAGAACTCTTTCAGATTACAAT 1136611 Query 27586 GTCCA-AAAGGAAT 27598 |||| ||||| || Sbjct 1136610 ATCCAGAAAGGTAT 1136597 >seq7337 Length=451322 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || || | || || ||||| || ||| | || || || | Sbjct 238309 AATGCAGATCTTCGTTAAAACTTTGACTGGGAAGACCATCACTTTGGAAGTCGAAGCCTC 238368 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | ||||| |||||||||||||| || |||||||| || || || Sbjct 238369 CGATACTATTGAGAATGTAAAGGCCAAAATTCAGGACAAAGAAGGAATTCCCCCTGATCA 238428 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | ||||| ||||| || || | || |||| || || || ||||||| || Sbjct 238429 GCAAAGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACGCTCTCAGACTACAA 238488 Query 27585 TGTCCAAAAGG 27595 | |||| |||| Sbjct 238489 TATCCAGAAGG 238499 >seq615 Length=2534639 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 || ||||||||||||||||| || ||||| ||| || || ||||| |||||| | || Sbjct 1867060 GTAGAAGGAATTTTCTTTTCGGGATCATTTGCTTCAATATTTTGGCTGAAAAAGAGAGGA 1867001 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGA 64844 || ||||| ||| || ||||||| ||||| || || || |||||||| Sbjct 1867000 CTTATGCCTGGTTTGACGTTTTCCAACGAACTTATTTCGCGGGACGA 1866954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570237927805920