Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3560 107 1e-18 seq1460 104 1e-17 >seq3560 Length=1522174 Score = 107 bits (118), Expect = 1e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| ||||||||||| ||||| |||| | || || || |||||||| ||||| | Sbjct 966179 CCTTTTGGATGTTATAATCAGAAAGAGTTCTGCCATCCTCCAGCTGTTTACCAGCAAAGA 966120 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-AT 34635 | || | ||| ||||| || || | || |||||||| |||| |||| |||||| | Sbjct 966119 TCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATC-TTTGCCTTAACGTTT 966061 Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 ||| |||||| |||||||| | ||| || ||||| || || | ||||| || Sbjct 966060 TCAATAGTGTCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACG 966001 Query 34696 AAAATCTGCAT 34706 || |||||||| Sbjct 966000 AAGATCTGCAT 965990 Score = 104 bits (114), Expect = 1e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 ||||||||||| ||||| || || ||||| | |||||||| || || || ||||| || Sbjct 971177 TTTTGAATGTTGTAATCAGAGAGGGTTCGGCCATCTTCAAGCTGCTTTCCTGCAAAGATC 971118 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AA 34637 || | ||||||||| || || | || ||||||||| |||| || | || ||| | Sbjct 971117 AACCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATC-TTGGCCTTCACGTTCTC 971059 Query 34638 AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 ||| |||||| ||||||||| | ||||| ||||| || || | || || || || Sbjct 971058 AATAGTGTCTGACGGCTCCACTTCAAGAGTTATAGTTTTCCCTGTAAGTGTCTTAACGAA 970999 Query 34698 AATCTGCAT 34706 |||||||| Sbjct 970998 GATCTGCAT 970990 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 ||||| ||||||||||||||||| |||| | ||||| || ||||| || || || || Sbjct 965872 TTTTGGATGTTATAATCTGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGATC 965813 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AA 34637 || | ||||||||| || || | || ||||| ||| |||| || | || ||| | Sbjct 965812 AATCTCTGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATC-TTGGCCTTGACGTTCTC 965754 Query 34638 AATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAA 34696 ||| |||||| || | |||||||||| || || ||||| || || | || || |||| Sbjct 965753 AATGGTGTCTGACGGT-TCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACAA 965695 Query 34697 AAATCTGCAT 34706 | || ||||| Sbjct 965694 ATATTTGCAT 965685 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| |||||||||||||| || ||||| || | ||||| || ||||| || |||||| Sbjct 967397 CCTTTCTGAATGTTATAATCAGAGAGTGTACGGCCATCTTCCAGCTGTTTGCCAGCAAAT 967338 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | ||||||||| || || | || || ||||| ||| ||||| ||||| | Sbjct 967337 ATCAATCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCCTGGAT-TTTTGCCTTAACATT 967279 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| |||||| ||||||||||| || || || || || || | || || || Sbjct 967278 CTCAATAGTGTCTGATGGCTCCACTTCCAGTGTGATGGTCTTTCCAGTCAGTGTCTTAAC 967219 Query 34695 AAAAATCTGCAT 34706 || || ||||| Sbjct 967218 GAATATTTGCAT 967207 Score = 91.5 bits (100), Expect = 9e-14 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 34509 AGTG-CTCTCCTTTT-GAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTA 34566 |||| ||| |||||| ||||||| || ||||||||||| || | ||||| | ||| || Sbjct 965588 AGTGACTCACCTTTTTGAATGTTGTAGTCTGAAAGTGTGCGGCCATCTTCTAATTGCTTT 965529 Query 34567 CCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGT 34626 || ||||| || | | ||||||||| ||||| | ||||||||| ||| ||| ||| | Sbjct 965528 CCAGCAAAAATCAGTCTCTGTTGGTCGGGCGGGATTCCCTCCTTATCT-TGAATTTTAGC 965470 Query 34627 TTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAA 34685 || || | |||||| || ||| ||||| | ||| || || || || || | Sbjct 965469 CTTCACATTTTCAATTGTATCAGAAGGCTCAACTTCGAGGGTAATAGTCTTCCCTGTAAG 965410 Query 34686 CGTTTTCACAAAAATCTGCAT 34706 || || || || |||||||| Sbjct 965409 GGTCTTGACGAAGATCTGCAT 965389 >seq1460 Length=1689650 Score = 104 bits (114), Expect = 1e-17 Identities = 146/199 (73%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || || || ||||||||||| |||| | | ||||||||||| || || || || Sbjct 1136600 CCTTTCTGGATATTGTAATCTGAAAGAGTTCTCCCATCTTCAAGTTGCTTTCCAGCGAAA 1136659 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | | || ||||| || || | ||| || || || ||| ||| | || || | Sbjct 1136660 ATAAGCCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCC-TGAATTTTAGCCTTCACATT 1136718 Query 34636 AA-AATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 ||| ||||| |||| ||| || || | ||||||||||||||| ||||| ||||| Sbjct 1136719 TTCAATGGTGTC--CGCTGGCTCAACCTCAAGGGTTATCGTTTTACCCGTTAAGGTTTTT 1136776 Query 34693 ACAAAAATCTGCATGTTGA 34711 || |||||||||||| ||| Sbjct 1136777 ACGAAAATCTGCATGCTGA 1136795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314690605592678