Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq3501 176 2e-39 seq2686 167 1e-36 >seq3501 Length=12068 Score = 176 bits (194), Expect = 2e-39 Identities = 397/590 (67%), Gaps = 29/590 (5%) Strand=Plus/Plus Query 66619 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66678 ||||| ||||| || || || |||| ||||| |||||||| ||| || ||||| Sbjct 2085 CGCCTTTATCGATGCCGAACATGCCCTTGACCCGCGATACGCCAAAAAGCTGGGCGTGGA 2144 Query 66679 CCTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGAT---CGT 66735 | |||||||||| || | ||||| || || ||||||||||| ||||| || || Sbjct 2145 CATCGACAACCTGCTGATATCCCAGCCGGACACTGGCGAGCAGGCACTGGAAATTACCGA 2204 Query 66736 TGACCTCCT-CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCC 66794 || || | ||| || || | | | || ||||||| ||||| |||||||| Sbjct 2205 TGGACTGGTACGT----TCCGGTGCCATCAGCGTCATCGTCGTCGACTCGGTGGCGGCAT 2260 Query 66795 TGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGC 66854 || ||| || || |||| || || ||||| |||| ||| | ||| |||| || | Sbjct 2261 TGACGCCCAAGGCGGAAATCGAGGGAGAAATCGGTGACACGCACATGGGCGTGCATGCCC 2320 Query 66855 GCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGA 66914 || | ||| ||||| ||||||||||| |||| |||| | || || || | Sbjct 2321 GCATGATGAGTCAGGCGATGCGCAAGCTGCGGGGCAGCATCAATACCAGTAAGACCATCG 2380 Query 66915 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGC---CCGAATG 66971 | | |||||||| ||||| ||| |||||| ||| | |||| ||| | Sbjct 2381 TCATTTTTATCAACCAGCTGCGCATGAAAATCGGC---GTGATGTTCGGCAACCCG---G 2434 Query 66972 AGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTC 67031 | ||||| || ||||| || ||| | | |||||| || || || || |||||||| || | Sbjct 2435 AAACCACTACCGGCGGCAATGCTCTCAAGTTCTATGCGTCGGTGCGCATGGATGTTCGCC 2494 Query 67032 GCATCGCCACCGAGAAG-GAA--GGCGATGAGG---CTGTCG------GCAACCGCACCC 67079 |||||| | || ||| | | ||||| ||| |||| | ||| | |||| Sbjct 2495 GCATCGGCGCCATCAAGAGCACCGGCGACAAGGACCCTGTGGTGATTGGCAGCGAAACCC 2554 Query 67080 GGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTCTCCGTCG 67139 | || |||||||||||||| || |||| |||||| |||| | || |||||| | Sbjct 2555 GCGTCAAGGTCGTCAAGAATAAAGTGGCGCCGCCGTTCCGCCAGGCTGAGTTCCAACTGT 2614 Query 67140 TGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTG 67189 ||||||| || || || || |||| | || | |||||||||| |||| Sbjct 2615 TGTACGGCGAAGGAATTTCCCGTGCCGGTGAGGTGCTCGACCTGGGCGTG 2664 >seq2686 Length=5122 Score = 167 bits (184), Expect = 1e-36 Identities = 361/531 (68%), Gaps = 23/531 (4%) Strand=Plus/Plus Query 66536 GAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACG-CGGTG---GC 66591 |||||||||||||| || || || || ||| | || ||| || | |||| || Sbjct 4605 GAAATCTACGGCCCCGAGTCGTCCGGCAAGACCACC----GTCGCCCTGTCGGTCATTGC 4660 Query 66592 CAATGCGCAGAAGGCCGG-TGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66650 | || ||| ||||| | |||| || |||| ||||| || |||||| | || || | Sbjct 4661 CTGCGCCCAGCGCGCCGGCTTGCAATGC-GCCTTTATCGATGCCGAGCACACGCTCGATC 4719 Query 66651 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGATA 66710 | ||||| || ||| || || || ||| | ||| | | |||||||| | Sbjct 4720 CGCGTTACGCGCAGCAGCTGGGCGTCGATATCGGTGAACTCCTCATCTCCCAGCCCGACA 4779 Query 66711 CCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTC--CAT 66768 ||||||||||||| ||||| ||| |||| | | || || |||| | ||| | | Sbjct 4780 CCGGCGAGCAGGCGCTGGAAATCTGTGACGCCTTGGTGCGTTCCGGCG--CCGTCGGCGT 4837 Query 66769 CGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 66828 || || || || ||||| || |||||||||||| ||| || ||||| || ||||| Sbjct 4838 GGTGGTGGTCGATTCCGTCGCCGCCCTGGTGCCGAAAAACGAACTGGAAGGGGAGATCGG 4897 Query 66829 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGG 66888 ||| || | |||||||| || ||| | ||| ||||| ||||||||||| | || Sbjct 4898 CGACGCCCAGATGGGCCTGCAGGCCCGCATGATGAGCCAGGCGATGCGCAAGCTGAAGGG 4957 Query 66889 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66948 || |||| || |||| |||| || | ||| |||||||| ||||| ||||||||| Sbjct 4958 CAGCATCAACACCACCCGCACGGTGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGG 5017 Query 66949 C---AACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTA 67005 | | | ||| || |||||| |||||| | ||||| || || | | |||||| Sbjct 5018 CGTGATGTTCGGCAAC--CCCGAA----ACCACCGCCGGCGGCAACGCCCTCAAGTTCTA 5071 Query 67006 CGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 67056 ||||| || ||| | || || ||| || || || || |||||||| || Sbjct 5072 TGCCTCGGTGCGTCTCGACGTGCGTGGCGCCGGCAACGTCAAGGAAGGGGA 5122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242830710002244