Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq3501 196 2e-45 seq2686 165 4e-36 >seq3501 Length=12068 Score = 196 bits (216), Expect = 2e-45 Identities = 401/589 (68%), Gaps = 29/589 (5%) Strand=Plus/Plus Query 66243 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66302 |||| ||||| || || || |||| ||||| |||||||| ||| || |||||| Sbjct 2086 GCCTTTATCGATGCCGAACATGCCCTTGACCCGCGATACGCCAAAAAGCTGGGCGTGGAC 2145 Query 66303 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGAT---CGTT 66359 |||||||||| || | ||||||||||||||||||||||| ||||| || || | Sbjct 2146 ATCGACAACCTGCTGATATCCCAGCCGGACACTGGCGAGCAGGCACTGGAAATTACCGAT 2205 Query 66360 GACCTCCT-CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCT 66418 | || | ||| || || | | | || ||||||| ||||| |||||||| | Sbjct 2206 GGACTGGTACGT----TCCGGTGCCATCAGCGTCATCGTCGTCGACTCGGTGGCGGCATT 2261 Query 66419 GGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCG 66478 | ||| || || |||| || || ||||| |||| ||| | ||| |||| || || Sbjct 2262 GACGCCCAAGGCGGAAATCGAGGGAGAAATCGGTGACACGCACATGGGCGTGCATGCCCG 2321 Query 66479 CCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGAC 66538 | | ||| ||||| ||||||||||| |||| |||| | || || || | Sbjct 2322 CATGATGAGTCAGGCGATGCGCAAGCTGCGGGGCAGCATCAATACCAGTAAGACCATCGT 2381 Query 66539 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAAC---GA 66595 | | |||||||| ||||| ||| |||||| ||| | |||| ||| || Sbjct 2382 CATTTTTATCAACCAGCTGCGCATGAAAATCGGC---GTGATGTTCGGC---AACCCGGA 2435 Query 66596 GACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCG 66655 ||||| || |||||||| ||| | | |||||| || || || ||||||||||| || || Sbjct 2436 AACCACTACCGGCGGCAATGCTCTCAAGTTCTATGCGTCGGTGCGCATGGATGTTCGCCG 2495 Query 66656 CATCGCCACCGAGAAG-GAA--GGCGATGAGG---CTGTCG------GCAACCGCACCCG 66703 ||||| | || ||| | | ||||| ||| |||| | ||| | ||||| Sbjct 2496 CATCGGCGCCATCAAGAGCACCGGCGACAAGGACCCTGTGGTGATTGGCAGCGAAACCCG 2555 Query 66704 GGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTCTCCGTCGT 66763 || |||||||||||||| || |||| |||||| |||| | || |||||| | | Sbjct 2556 CGTCAAGGTCGTCAAGAATAAAGTGGCGCCGCCGTTCCGCCAGGCTGAGTTCCAACTGTT 2615 Query 66764 GTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTG 66812 |||||| || || || || |||| | || | |||||||||| |||| Sbjct 2616 GTACGGCGAAGGAATTTCCCGTGCCGGTGAGGTGCTCGACCTGGGCGTG 2664 >seq2686 Length=5122 Score = 165 bits (182), Expect = 4e-36 Identities = 358/528 (68%), Gaps = 17/528 (3%) Strand=Plus/Plus Query 66159 GAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACG-CGGTG---GC 66214 |||||||||||||| || || || || ||| | || ||| || | |||| || Sbjct 4605 GAAATCTACGGCCCCGAGTCGTCCGGCAAGACCACC----GTCGCCCTGTCGGTCATTGC 4660 Query 66215 CAATGCCCAGAAGGCCGG-TGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACC 66273 | |||||| ||||| | |||| || |||| ||||| || |||||| | || || | Sbjct 4661 CTGCGCCCAGCGCGCCGGCTTGCAATGC-GCCTTTATCGATGCCGAGCACACGCTCGATC 4719 Query 66274 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 66333 | ||||| || ||| || || || ||| | ||| | | ||||| |||| Sbjct 4720 CGCGTTACGCGCAGCAGCTGGGCGTCGATATCGGTGAACTCCTCATCTCCCAGCCCGACA 4779 Query 66334 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTC--CAT 66391 | ||||||||||| ||||| ||| |||| | | || || |||| | ||| | | Sbjct 4780 CCGGCGAGCAGGCGCTGGAAATCTGTGACGCCTTGGTGCGTTCCGGCG--CCGTCGGCGT 4837 Query 66392 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 66451 || || || || || || || |||||||||||| ||| || ||||| || ||||| Sbjct 4838 GGTGGTGGTCGATTCCGTCGCCGCCCTGGTGCCGAAAAACGAACTGGAAGGGGAGATCGG 4897 Query 66452 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66511 ||| || | |||||||| || ||| | ||| ||||| ||||||||||| | || Sbjct 4898 CGACGCCCAGATGGGCCTGCAGGCCCGCATGATGAGCCAGGCGATGCGCAAGCTGAAGGG 4957 Query 66512 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66571 || |||| || |||| |||| || | ||| |||||||| ||||| ||||||||| Sbjct 4958 CAGCATCAACACCACCCGCACGGTGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGG 5017 Query 66572 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 66631 |||| | |||| ||| |||||| | |||||||| || | | |||||| || Sbjct 5018 ---CGTGATGTTCGGCAACCCCGAAACCACCGCCGGCGGCAACGCCCTCAAGTTCTATGC 5074 Query 66632 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 66679 ||| || || | || || ||| || || || || |||||||| || Sbjct 5075 CTCGGTGCGTCTCGACGTGCGTGGCGCCGGCAACGTCAAGGAAGGGGA 5122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240930145507800