Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3560 168 2e-36 seq7337 152 1e-31 >seq3560 Length=1522174 Score = 168 bits (186), Expect = 2e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||||||||||||||| | |||||| || |||||||||||||| ||||| ||||||| Sbjct 965874 CTTTTTGGATGTTATAATCTGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGA 965815 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | |||||||| ||||||| |||||||| || |||||||| || ||||| | Sbjct 965814 TCAATCTCTGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCT 965755 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | |||||||| || ||| || || | |||||| || ||||| || |||||||| |||| Sbjct 965754 CAATGGTGTCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACAA 965695 Query 211105 ACACCTGCATT 211115 | | |||||| Sbjct 965694 ATATTTGCATT 965684 Score = 152 bits (168), Expect = 1e-31 Identities = 147/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||||||||| | ||| || || ||||| |||||||| || || || ||||| Sbjct 966177 TTTTGGATGTTATAATCAGAAAGAGTTCTGCCATCCTCCAGCTGTTTACCAGCAAAGATC 966118 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | | || |||||||| |||| ||||||||||||||||||||| || |||||||| Sbjct 966117 AATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACGTTTTCA 966058 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || ||||| || ||| || || || || || || |||||||| ||||| || || || Sbjct 966057 ATAGTGTCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAG 965998 Query 211107 ACCTGCATT 211115 | ||||||| Sbjct 965997 ATCTGCATT 965989 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| ||||| ||||| | ||||| | |||||||| |||||||| ||||| |||| Sbjct 971179 CTTTTTGAATGTTGTAATCAGAGAGGGTTCGGCCATCTTCAAGCTGCTTTCCTGCAAAGA 971120 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | ||||||||||| |||| ||||||||||| |||||||| |||||||| | Sbjct 971119 TCAACCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCT 971060 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || ||||| || || || || ||||| || || || || || || ||||| || | Sbjct 971059 CAATAGTGTCTGACGGCTCCACTTCAAGAGTTATAGTTTTCCCTGTAAGTGTCTTAACGA 971000 Query 211105 ACACCTGCATT 211115 | | ||||||| Sbjct 970999 AGATCTGCATT 970989 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||| ||||| | || || | ||||| |||||||| || || || |||| Sbjct 967962 CTTTCTGGATGTTGTAATCTGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAAGA 967903 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | || |||||||| |||| ||||||||||||||||| ||| || || || | Sbjct 967902 TCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTAACATTCT 967843 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | |||||||| || ||| || || ||||| || |||||||| ||||| ||||| |||| Sbjct 967842 CAATGGTGTCTGAAGGTTCCACTTCCAGAGTAATTGTCTTTCCAGTGAGTGTCTTGACAA 967783 Query 211105 ACACCTGCAT 211114 | | ||||| Sbjct 967782 AGATTTGCAT 967773 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| ||||| ||||| | ||||| | ||||| |||| |||||| ||||| |||| Sbjct 971483 CTTTTTGAATGTTGTAATCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCTGCAAAGA 971424 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | || ||||||||||||| || || || ||||||||||| |||||||| | Sbjct 971423 TCAATCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCT 971364 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || ||||| || ||| || || ||||| || || || || || || ||||| || | Sbjct 971363 CAATAGTGTCTGACGGTTCCACTTCAAGAGTTATAGTTTTCCCTGTAAGTGTCTTGACGA 971304 Query 211105 ACACCTGCATT 211115 | | |||||| Sbjct 971303 AAATTTGCATT 971293 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || ||||||||||| | || || | |||||||||||||| ||||| || || | Sbjct 967396 CTTTCTGAATGTTATAATCAGAGAGTGTACGGCCATCTTCCAGCTGTTTGCCAGCAAATA 967337 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | |||||||| || |||| ||||| ||||||||||| ||| || || || | Sbjct 967336 TCAATCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTAACATTCT 967277 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || ||||| || || || || || ||||| |||||||| || || ||||| || | Sbjct 967276 CAATAGTGTCTGATGGCTCCACTTCCAGTGTGATGGTCTTTCCAGTCAGTGTCTTAACGA 967217 Query 211105 ACACCTGCAT 211114 | | ||||| Sbjct 967216 ATATTTGCAT 967207 Score = 104 bits (114), Expect = 5e-17 Identities = 137/189 (72%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| ||||| | || || | ||||| |||||||| || || || ||||| Sbjct 973148 TTCTGAATGTTGTAATCTGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAAGATC 973089 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | | || |||||||| |||| ||||||||||| |||||| || || || || || Sbjct 973088 AATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGGATC-TTGCCTTAACATTCTCA 973030 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || || || || ||| || || || || || || |||||||| ||||| || || || Sbjct 973029 ATCGTATCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAG 972970 Query 211107 ACCTGCATT 211115 | ||||||| Sbjct 972969 ATCTGCATT 972961 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| ||||| | || || | ||||||||||||||||| || || ||||| Sbjct 969118 TTCTGTATGTTGTAATCAGAGAGAGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATC 969059 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | | || |||||||| |||| |||||||||||||||||||| || ||||| || Sbjct 969058 AATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCA 968999 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 || || || || ||| || || ||||| Sbjct 968998 ATCGTATCTGATGGTTCCACTTCAAGAGT 968970 >seq7337 Length=451322 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| || || ||||| ||||| || || ||||| || || ||||| || | | ||| Sbjct 240221 ACGAAGCCTAAGAACAAGATGAAGTGTTGATTCTTTCTGAATATTATAGTCGGACAAGGT 240162 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || ||||||||||| || ||||| || | ||||||||||| || | || Sbjct 240161 ACGTCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCAGGTGGGATACC 240102 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || ||||| || ||| || ||||| || ||||| || |||||||| || Sbjct 240101 CTCCTTATCTTGGATTTTGGCTTTTACATTTTCAATTGTGTCTGATGGCTCAACCTCCAG 240042 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || |||||||| || || | |||||| Sbjct 240041 GGTGATGGTCTTCCCGGTAAGAGTCTTCACGAAGATCTGCAT 240000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159001018278590