Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq615 123 3e-23 seq2348 120 4e-22 seq7298 91.5 2e-13 seq3248 86.0 9e-12 >seq615 Length=2534639 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 ||||| | |||||| ||||| | |||| |||||||| || |||| |||||| || || Sbjct 1867268 TCTTTGATGTAAGTGTCTATGAGAAGAGAGTACATTTCCGAATGAACATTTTCCATGGCT 1867327 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 || ||||||||||||||||| || ||||||| || || || || || |||||||| Sbjct 1867328 ATTTGAAATCCGTAAAAACACCTTGCTTCTGGAATTTGAACTTCTTGACTGAATCGTTCC 1867387 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATG 48574 ||| ||| || || || |||||||| || || ||||| |||||||| || Sbjct 1867388 ACCAGATTTTCGTTGACGATTCCATCCGATGCCGCGAAAAAAGCTAATACGTG 1867440 Score = 107 bits (118), Expect = 3e-18 Identities = 152/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235 ||| | |||||| ||||| || | ||| ||||| ||||| | ||||| ||||||||||| Sbjct 1866965 AATAAGTTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTTTCAGCCAAAATAT 1867024 Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 || || || ||||| |||||||| || |||||||| || |||||||| | | || Sbjct 1867025 TGAAGCAAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATGCAACCACACGTTC 1867084 Query 48296 TCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTAC 48352 ||| |||| || || | |||||| | |||||| ||||||||| || Sbjct 1867085 ACCGAAACTTGCAGTATCACTTGCAATCCACTGCAATGCCCACGTAGCCTTCTTTCGAAC 1867144 Query 48353 ACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 ||| || | ||||| || ||||| || ||||| Sbjct 1867145 ACACGGTAAGGTTTCAATGGCATTGAATAGAAA 1867177 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || || | ||| |||||||| ||||||||||||||||||| ||||| || ||||| ||| Sbjct 1867573 TTGGAAAGATCAACTTCTTCCACTGTCCAAAATGATGCCTCCGCTTTCTTGTACATCTTC 1867632 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || |||||| ||| || || ||||| || ||||| Sbjct 1867633 CAAATATCATGGTACTGAATCGGGAATATCACAAA 1867667 >seq2348 Length=1756034 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||| ||||| || |||||| ||| |||||| || | ||||| || |||||||| Sbjct 612037 TTCGAATTCTTCACCCCAACAATCGAACAATCCTGGACTTTCATGGGGACACATCAAACT 611978 Query 77984 CCAGTCACCATCTTCCTT-AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| | |||| | | || ||| |||||||| || | ||||| ||||| || || | Sbjct 611977 CCATACGCCAT-TACTTTCAACACGTTTCATGAACAAGTCAGGAATCCACAGGGCGTAGA 611919 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 | ||||| |||| ||| ||| || |||||||||||||| || || || | ||| || | Sbjct 611918 AGAGATCACGGGCTCTCACTTCCTCTTTTCCTGTATTCTTCTTCAGGTCCAAAAATTCAA 611859 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 ||| |||| ||||||||| || ||||| || || | | ||||||| Sbjct 611858 AAATGTCAGCATGCCATGGCTCAAGATAAATGGCAAATGCACCAGGTC 611811 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||| ||||| | ||||| | ||||| ||||| ||||| ||||| | ||| Sbjct 617934 TGAAATTCCCCAGAAAGCACTCTCCTGGTGTATATATTGGAAGTATAAGGTTCAATTGAT 617875 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 |||||||| || |||||||| ||||| |||||||||||||| || |||| | | | | Sbjct 617874 TCATTGTTGCCTAAAATTTGGGCAGTGGAAGCAGTTGGCATTGGGGCCATAAGAAGAGAA 617815 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || | | |||||| | || || | || | | | ||| ||||| |||||||| Sbjct 617814 TTACGAACTCCATGTTTCGCAATGTTTGCCTTCAAAACATCCCAGTCCCAGAGATCTGAC 617755 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 ||| |||| ||| | ||| | ||||| ||| Sbjct 617754 GGTTTCACATTCCACATATCTTGTTGTAAAAT 617723 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 || || | |||| ||||| ||| | ||||| || | || ||||| ||||| ||||| Sbjct 611236 CTTGAAAGTTGAGGATGAGGAGTAGCAGCATTGAAAAGCGTTGGAGAGGCATGAGTAAAG 611177 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | ||||| | ||||| ||||||||||| |||| || | ||| ||| || Sbjct 611176 AAACGCTCAGATAAGAGATTATATGTTTCAATGGCTGCCTCCACATCCTCCCCATGGATC 611117 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || || ||||||||||||||||||||||||||||| || Sbjct 611116 CCCACAGCTACACGCATCAACATATGCTGAGGTCTCTC 611079 >seq7298 Length=1178 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 76858 AGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACT 76917 ||||||||||| || || || ||| | || || || ||||| ||||||| |||| Sbjct 1045 AGAAATGCATGGAGGTGAGCTTTCCGTAATTTGGCTCAGCAATATGTATATTCAAAGACT 986 Query 76918 GACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAA 76977 | ||||| || ||||| |||||||| || | ||||||| || ||| | || ||||||| Sbjct 985 GGCTTTGGTCAATGAATGCTCCTCTGTCTACAGCCATTTCAATTATGTTTTTCTGAGGAA 926 Query 76978 TTTCCCAAATAGT 76990 ||||||| | ||| Sbjct 925 TTTCCCATACAGT 913 >seq3248 Length=433311 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 43310 ACCTGTGTTAGAGATCGCCAATCCATGTTAGCACTTCCTAAATAAATATGTCTATTATCT 43369 ||||| || ||||||| ||||||||||||||||||||| | ||||| ||| | |||| Sbjct 46843 ACCTGAGTAAGAGATCTCCAATCCATGTTAGCACTTCCAACATAAAAATGCTTTCTATCC 46902 Query 43370 GATATCCAAAATTTAGTATGAAGAACTCCACC 43401 | |||||| || |||||||| |||||||| Sbjct 46903 ACCAGCCAAAACTTCGTATGAAGGACTCCACC 46934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694580524962240