Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2348 120 4e-22 seq615 114 2e-20 seq7298 91.5 2e-13 >seq2348 Length=1756034 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| ||||| || |||||| ||| ||| || |||| ||||| ||||||||||| Sbjct 612037 TTCGAATTCTTCACCCCAACAATCGAACAATCCTGGACTTTCATGGGGACACATCAAACT 611978 Query 76579 CCACTCACCATCTTCCTT-AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 ||| | |||| | | || ||| |||||||| || | ||||| ||||| || || | Sbjct 611977 CCATACGCCAT-TACTTTCAACACGTTTCATGAACAAGTCAGGAATCCACAGGGCGTAGA 611919 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 | ||||| |||| ||| ||| || |||||||||||||| || || || | || || | Sbjct 611918 AGAGATCACGGGCTCTCACTTCCTCTTTTCCTGTATTCTTCTTCAGGTCCAAAAATTCAA 611859 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTC 76745 ||| |||| ||||||||| || ||||| || || | |||| |||| Sbjct 611858 AAATGTCAGCATGCCATGGCTCAAGATAAATGGCAAATGCACCAGGTC 611811 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 |||| |||| || |||||||| ||||| | ||||| | ||||| ||||| || Sbjct 617950 ATGATAATTACAAACCTGAAATTCCCCAGAAAGCACTCTCCTGGTGTATATATTGGAAGT 617891 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||| ||||| | ||||||||||| || |||||||| ||||| |||||||| ||||| || Sbjct 617890 ATAAGGTTCAATTGATTCATTGTTGCCTAAAATTTGGGCAGTGGAAGCAGTTGGCATTGG 617831 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 |||| | | | ||| | | |||||| | || || | || | | | ||| Sbjct 617830 GGCCATAAGAAGAGAATTACGAACTCCATGTTTCGCAATGTTTGCCTTCAAAACATCCCA 617771 Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||||| |||||||| ||| |||| ||| | ||| | ||||| ||| Sbjct 617770 GTCCCAGAGATCTGACGGTTTCACATTCCACATATCTTGTTGTAAAAT 617723 Score = 100 bits (110), Expect = 4e-16 Identities = 153/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || || | |||| ||||| ||| | ||||| || | || ||||| |||||||| || Sbjct 611236 CTTGAAAGTTGAGGATGAGGAGTAGCAGCATTGAAAAGCGTTGGAGAGGCATGAGTAAAG 611177 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 | ||||| | ||||| ||||||||||| |||| || | |||| ||| || Sbjct 611176 AAACGCTCAGATAAGAGATTATATGTTTCAATGGCTGCCTCCACATCCTCCCCATGGATC 611117 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 || ||||| ||||||||||||||||||||||||| ||| | ||| || ||| ||| Sbjct 611116 CCCACAGCTACACGCATCAACATATGCTGAGGTCTCTCTGCTACTTTACCATCTATCTTC 611057 Query 77153 AACAAGTATGATTTTTCCAAAGT-TTTAAAACCAAAA 77188 | || || ||| |||| || | |||| ||||| Sbjct 611056 AGTAAATAGGATCGCTCCAGGGTCTACAAAAACAAAA 611020 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378 |||| | |||||| || || |||||||| || ||||| |||||||| ||||| || || Sbjct 614263 TATTCAACTATCTCAGTACACAGATTACTGCATTTGATGGTTCCAAGGTTTTGCTGATTA 614204 Query 76379 CTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGAT 76438 ||| | || || | || || || || | ||| |||||||||||||| ||||| ||| Sbjct 614203 GATTTTCTATTGCAAGCATCTTTGTATAGCATAAATGGAGTTCCAGTTTCTATCTGAGAT 614144 Query 76439 TCGAT 76443 || || Sbjct 614143 TCAAT 614139 >seq615 Length=2534639 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||| | || || ||||| | |||| |||||||| ||||||| ||||| || || Sbjct 1867268 TCTTTGATGTAAGTGTCTATGAGAAGAGAGTACATTTCCGAATGAACATTTTCCATGGCT 1867327 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 || ||||||||||||||||| |||||||| | ||| || || ||| || |||||||| Sbjct 1867328 ATTTGAAATCCGTAAAAACACCTTGCTTCTGGAATTTGAACTTCTTGACTGAATCGTTCC 1867387 Query 47011 GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATG 47063 || ||| || || || |||||||| || || ||||| || ||||| || Sbjct 1867388 ACCAGATTTTCGTTGACGATTCCATCCGATGCCGCGAAAAAAGCTAATACGTG 1867440 Score = 113 bits (124), Expect = 6e-20 Identities = 153/213 (72%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 46665 AATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATAT 46724 ||| | |||||| ||||| || | |||||||| ||||| | |||||| ||||||||||| Sbjct 1866965 AATAAGTTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTTTCAGCCAAAATAT 1867024 Query 46725 AGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784 | || || ||||| |||||||| || |||||||| || || ||||| || | | || Sbjct 1867025 TGAAGCAAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATGCAACCACACGTTC 1867084 Query 46785 TCCGTAACTGGC---ATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTAC 46841 ||| |||| || |||| | ||||||| ||||| |||||| || || Sbjct 1867085 ACCGAAACTTGCAGTATCACTTGCAATCCACTGCAATGCCCACGTAGCCTTCTTTCGAAC 1867144 Query 46842 ACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 ||| || | ||||| || ||||| || ||||| Sbjct 1867145 ACACGGTAAGGTTTCAATGGCATTGAATAGAAA 1867177 >seq7298 Length=1178 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75453 AGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACT 75512 ||||||||||| || || || ||| | || || || ||||| ||||||| |||| Sbjct 1045 AGAAATGCATGGAGGTGAGCTTTCCGTAATTTGGCTCAGCAATATGTATATTCAAAGACT 986 Query 75513 GACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAA 75572 | ||||| || ||||| |||||||| || | ||||||| || ||| | || ||||||| Sbjct 985 GGCTTTGGTCAATGAATGCTCCTCTGTCTACAGCCATTTCAATTATGTTTTTCTGAGGAA 926 Query 75573 TTTCCCAAATAGT 75585 ||||||| | ||| Sbjct 925 TTTCCCATACAGT 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712843803861120