Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3560 131 1e-25 >seq3560 Length=1522174 Score = 131 bits (144), Expect = 1e-25 Identities = 155/206 (75%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 44135 TGAAGCGTGCTCTCCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTG 44193 ||||| ||| ||||| |||||||||||||| | |||| || | || |||||||| Sbjct 967976 TGAAGTCTGCATACCTTTCTGGATGTTGTAATCTGAGAGTGTTCGGCCATCCTCCAGCTG 967917 Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 || || ||||||||||| | |||||| || | || | |||||||| ||| || || Sbjct 967916 TTTACCAGCAAAGATCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTTT 967857 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 ||| | || ||| | |||||||| | | |||||| |||| ||||| |||||||| | Sbjct 967856 -TGCCTTAACATTCTCAATGGTGTCTGAAGGTTCCACTTCCAGAGTAATTGTCTTTCCAG 967798 Query 44313 TGAGGGTCTTCACGAAGATTTGCATG 44338 |||| ||||| || |||||||||||| Sbjct 967797 TGAGTGTCTTGACAAAGATTTGCATG 967772 Score = 105 bits (116), Expect = 5e-18 Identities = 143/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||||||| ||||| | ||||| || | || |||||||| || || ||||| Sbjct 966179 CCTTTTGGATGTTATAATCAGAAAGAGTTCT-GC-CATCCTCCAGCTGTTTACCAGCAAA 966122 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG- 44264 |||||| | |||||| || | || | |||||||| ||| ||||| ||| | || | Sbjct 966121 GATCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTT-TGCCTTAACGT 966063 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || ||||| | | |||||| || | ||||| || |||||||| || || || | Sbjct 966062 TTTCAATAGTGTCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGA 966003 Query 44325 CGAAGATTTGCAT 44337 ||||||| ||||| Sbjct 966002 CGAAGATCTGCAT 965990 Score = 100 bits (110), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| || ||||||||||| | |||| || | || |||||||| || || ||||||| Sbjct 973150 CCTTCTGAATGTTGTAATCTGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAAGA 973091 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 |||| | |||||| || | || | |||||||| || |||| ||| | || ||| Sbjct 973090 TCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGGATCT--TGCCTTAACATTC 973033 Query 44268 -CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || || || | | |||||| || | ||||| || |||||||| || || || ||| Sbjct 973032 TCAATCGTATCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACG 972973 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 972972 AAGATCTGCAT 972962 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 ||||| ||||||||||| | ||| || | || |||| |||||| || ||||||||| Sbjct 971481 TTTTGAATGTTGTAATCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCTGCAAAGATC 971422 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-C 44268 || | |||||| || | ||| | || || || ||| ||||| |||| | |||| | Sbjct 971421 AATCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGGCCTTC-ACGTTCTC 971363 Query 44269 TATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 || ||||| | | |||||| || | || || || || || || || ||||| ||||| Sbjct 971362 AATAGTGTCTGACGGTTCCACTTCAAGAGTTATAGTTTTCCCTGTAAGTGTCTTGACGAA 971303 Query 44329 GATTTGCAT 44337 |||||||| Sbjct 971302 AATTTGCAT 971294 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 ||||| ||||||||||| | ||| || | || || |||||||| || ||||||||| Sbjct 971177 TTTTGAATGTTGTAATCAGAGAGGGTTCGGCCATCTTCAAGCTGCTTTCCTGCAAAGATC 971118 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-C 44268 || | ||| || || | || | ||||||||| || ||||| |||| | |||| | Sbjct 971117 AACCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGCCTTC-ACGTTCTC 971059 Query 44269 TATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 || ||||| | | ||||| || | || || || || || || || ||||| ||||| Sbjct 971058 AATAGTGTCTGACGGCTCCACTTCAAGAGTTATAGTTTTCCCTGTAAGTGTCTTAACGAA 970999 Query 44329 GATTTGCAT 44337 ||| ||||| Sbjct 970998 GATCTGCAT 970990 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||| ||||| | || || || | || |||||||| || || || |||| Sbjct 965872 TTTTGGATGTTATAATCTGAAAG--GGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGA 965815 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 |||| | ||| || || | ||| | |||||||| || ||||| || | | |||| Sbjct 965814 TCAATCTCTGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTT-GGCCTTGACGTTC 965756 Query 44268 -CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | |||||| |||| || || || ||||| || || ||||| || Sbjct 965755 TCAATGGTGTCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACA 965696 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 965695 AATATTTGCAT 965685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359945797864422