Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3560 158 3e-33 seq7337 140 8e-28 seq1460 140 8e-28 >seq3560 Length=1522174 Score = 158 bits (174), Expect = 3e-33 Identities = 147/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || |||||||| ||||| | || |||||| |||||| Sbjct 965688 CAAATATTTGTTAAGACTCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCGTCAGAC 965747 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || || || ||||| || ||||| ||||| || Sbjct 965748 ACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCCGACCAACAG 965807 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || |||||||| |||||||| || || ||| | ||||||||| || Sbjct 965808 AGATTGATCTTCGCTGGCAAACAGCTGGAAGATGGCAGAACCCTTTCAGATTATAACATC 965867 Query 178104 CAAAAAG 178110 ||||||| Sbjct 965868 CAAAAAG 965874 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || ||||| ||||| || || || || |||||| |||||| Sbjct 971297 CAAATTTTCGTCAAGACACTTACAGGGAAAACTATAACTCTTGAAGTGGAACCGTCAGAC 971356 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||| ||||| ||||| || || ||||| |||||||| Sbjct 971357 ACTATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATTCCTCCTGACCAGCAG 971416 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| ||| | || ||||| | || || | ||||| ||| | Sbjct 971417 AGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGTACCCTCTCTGATTACAACATT 971476 Query 178104 CAAAAAG 178110 ||||||| Sbjct 971477 CAAAAAG 971483 Score = 125 bits (138), Expect = 2e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| ||||| || || || || || |||||| |||||| Sbjct 967776 CAAATCTTTGTCAAGACACTCACTGGAAAGACAATTACTCTGGAAGTGGAACCTTCAGAC 967835 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||| || |||||||| ||||| || || || |||||||| Sbjct 967836 ACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAGGAAGGCATTCCACCTGACCAGCAG 967895 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||||| || ||||| | || || | ||||| ||| || Sbjct 967896 AGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGAACACTCTCAGATTACAACATC 967955 Query 178104 CAAAAAG 178110 || |||| Sbjct 967956 CAGAAAG 967962 Score = 122 bits (134), Expect = 2e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || ||||| || || ||||| |||||| Sbjct 967210 CAAATATTCGTTAAGACACTGACTGGAAAGACCATCACACTGGAAGTGGAGCCATCAGAC 967269 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||| || |||||||||||||| || || || ||||| || Sbjct 967270 ACTATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGCATTCCACCAGACCAACAG 967329 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||||| |||||||| | || || | ||||||||| | Sbjct 967330 AGATTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGTACACTCTCTGATTATAACATT 967389 Query 178104 CAAAAAG 178110 || |||| Sbjct 967390 CAGAAAG 967396 >seq7337 Length=451322 Score = 140 bits (154), Expect = 8e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || || |||||||| ||||| || |||||| Sbjct 240003 CAGATCTTCGTGAAGACTCTTACCGGGAAGACCATCACCCTGGAGGTTGAGCCATCAGAC 240062 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || || || || ||||| || ||||| || Sbjct 240063 ACAATTGAAAATGTAAAAGCCAAAATCCAAGATAAGGAGGGTATCCCACCTGACCAACAG 240122 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| ||||| || || || ||||| || |||||| | || |||| |||| ||||| | Sbjct 240123 AGACTCATCTTTGCTGGCAAGCAGCTTGAGGATGGACGTAC-CTTGTCCGACTATAATAT 240181 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||||||||| ||||||||| | || || Sbjct 240182 TCAGAAAGAATCAACACTTCATCTTGTTCTTAGGCT 240217 Score = 105 bits (116), Expect = 2e-17 Identities = 122/164 (74%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| |||||| | || || || || ||||| | || || ||| Sbjct 238307 AAAATGC---AGATCTTCGTTAAAACTTTGACTGGGAAGACCATCACTTTGGAAGTCGAA 238363 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || || || ||||| || || || |||||||||||||||||||| || || Sbjct 238364 GCCTCCGATACTATTGAGAATGTAAAGGCCAAAATTCAGGACAAAGAAGGAATTCCCCCT 238423 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || |||||| || | || ||||| || |||||| | |||||||| Sbjct 238424 GATCAGCAAAGATTGATTTTCGCTGGCAAACAGTTGGAAGATGG 238467 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || || |||||||| ||||| || |||||| Sbjct 239804 CAGATCTTCGTGAAGACTCTTACCGGGAAGACCATCACCCTGGAGGTTGAGCCATCAGAC 239863 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| |||||||| || ||||| || || ||||| Sbjct 239864 ACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCTGATCAGCAG 239923 Query 178044 CGA 178046 ||| Sbjct 239924 CGA 239926 >seq1460 Length=1689650 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || || |||||||| ||||| ||||| || | ||| Sbjct 1136787 CAGATTTTCGTAAAAACCTTAACGGGTAAAACGATAACCCTTGAGGTTGAGCCAGCGGAC 1136728 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || || |||||||| ||||||||||| || || ||||||||| Sbjct 1136727 ACCATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCTGACCAGCAA 1136668 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| ||||| ||||| || || |||||||| || |||||| | ||||| || || Sbjct 1136667 AGGCTTATTTTCGCTGGAAAGCAACTTGAAGATGGGAGAACTCTTTCAGATTACAATATC 1136608 Query 178104 CAAAAAG 178110 || |||| Sbjct 1136607 CAGAAAG 1136601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203574411754204