Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25] 272,638 sequences; 241,555,716 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq51813 242 3e-59 seq38040 87.8 1e-12 >seq51813 Length=3444 Score = 242 bits (268), Expect = 3e-59 Identities = 641/973 (66%), Gaps = 7/973 (1%) Strand=Plus/Plus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || ||||||| ||||| || ||||| |||| || ||| ||||| ||| ||||| Sbjct 363 TTCGCAATCTCCCTGTAATCCACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTA 422 Query 35933 GCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCG 35992 || ||| |||| ||| ||| | ||| | || ||||| |||||||| || || Sbjct 423 GCGTTGCCTGTGAAGGGAATGTTGTCTTCGTAATCATGAACGCCAGTCCAACCACGACCA 482 Query 35993 TACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCC 36052 ||||| || || || || || | || || |||||||||| || || | |||| | Sbjct 483 TACATGGCAACACCTAATACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAATATTTT 542 Query 36053 ACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTC 36112 || | | || | ||||| | ||| || || ||||| || | |||||| || || Sbjct 543 ACTCCGAAGTCAGATGTGTAAGTTTCCTTGGGATTCCATGCAGGCGCGTACAATGGTGTT 602 Query 36113 TGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATT 36172 ||||| || ||| | ||| ||||| ||||| ||||| ||||| ||||||| |||||| Sbjct 603 TGATGTCCAAGAGTGTCATTTGACCAGGCTCCCTTGAAGTCATAGCTCATCAAGAAAATA 662 Query 36173 TTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCG 36232 | ||| | ||| | ||| || | |||| | ||| | ||| || || |||| | Sbjct 663 TGATCCATATAATTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAG 722 Query 36233 CTAATCGCTGTGGTGAGTTCTAAAGTACGATTCGTTTGTATTTGA-ACTTGATCGAGCAT 36291 ||||| || | || | ||| | | | | || || ||| | | ||||||||| Sbjct 723 CTAATAGCAGAAGTCAATTCGTATTT-CTTGCCATTCTTAGCTGAGAGCTCATCGAGCAT 781 Query 36292 GGCGCGCAATTCGCCCAATAAAGCGATATACGTGTTATTGTCGCGTTCCACATCGCCAAC 36351 | || ||||| || ||| | ||| | | || ||| || | Sbjct 782 CTCACGTAATTCTTTCATCAAACTTACATAGCAATCACCATC---TTCTGGGCTACCGAG 838 Query 36352 GTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAAA 36411 || || || || |||||||| || ||||| |||||||| ||||| | || ||||| || Sbjct 839 GTCAGGGTTAGCACCTTTGCCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAA 898 Query 36412 TTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGCATC 36471 ||||||||| | | ||| || || || | ||||| | || | | ||| Sbjct 899 TTTCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAGATTTATC 958 Query 36472 GTGCATATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAG 36531 | | | || ||||||| || ||||| || || || || | || | | || Sbjct 959 AACTAAAAAGAAAAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGG-AAGAATCTTCA 1017 Query 36532 ATTG-GGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCGT 36590 ||| || ||| |||| || ||||||||| || || |||||||||||||| |||| Sbjct 1018 ATTCCGGGCGGGCTTGTTTTAGTGACATTAATTGGCCGAAGTTGCCTTTGTAGGGCTCGT 1077 Query 36591 TCCATGCGCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGAAA 36650 |||||| | ||| ||||||||||||| | || ||||| |||||||| || || | Sbjct 1078 TCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGA 1137 Query 36651 CTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCCCCGTGATAG 36710 ||||||| | || | ||| || || | ||||| |||| ||||| || ||| Sbjct 1138 CTTTAAAGTCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCT 1197 Query 36711 ATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGTATAAAATGT 36770 |||||| ||||| ||||| ||||||||||||||||| || ||||| || || | | | Sbjct 1198 CTTTTAAGCTGTCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAAT 1257 Query 36771 GCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAACGCCCCATT 36830 | | ||| || || | || | |||||||| || || | || || ||||||| Sbjct 1258 GAGTAAGATTAGGTATAGGTATACGATCCACGGGGAACTTTCTAGGATAGACACCCCATT 1317 Query 36831 CGACAAAATAGGC 36843 | || || ||||| Sbjct 1318 CTACGAAGTAGGC 1330 >seq38040 Length=2861 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||||||||| | || || ||||| || || | || || ||| | Sbjct 2691 ATGCAAATTTTTGTTAAAACACTTACAGGAAAAACAATTACGTTAGAAGTTGAAGCTTCT 2632 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| |||||||| |||||| | ||||||||| | || || || Sbjct 2631 GACACAATTGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 2572 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| || || ||| ||||||| | || | ||| |||| | Sbjct 2571 CAACGTTTGATTTTTGCTGGAAAGCAATTGGAAGACGGCCGCACCCTTTCCGACTACAAC 2512 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| |||| || || | ||| | || ||||| |||||| Sbjct 2511 ATTCAAAAAGAATCCACCCTCCACCTGGTGCTGCGTTTGCGAGGAGGT 2464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416914069664960