Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25] 272,638 sequences; 241,555,716 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq210326 123 2e-23 seq55316 91.5 1e-13 >seq210326 Length=301 Score = 123 bits (136), Expect = 2e-23 Identities = 110/136 (81%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 ||||||| ||| ||||||||| || ||||| |||||||| ||||||||||||||||| Sbjct 29 CCTCATCCCTAGAAATAAGTTCATTGCTGAAA--GTTAATCCGGGCATCAATCCTCGTTT 86 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 ||| ||||||||||||| ||| || || || || |||||| |||||||||| ||||| Sbjct 87 TTTCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTTCCTCAACTGCCGCAAA 146 Query 13800 CGCTATTAGTCGTTCT 13815 || || | |||||| Sbjct 147 AGCGATAATACGTTCT 162 >seq55316 Length=1040 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 13913 TCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 ||||||||| | ||| || || || ||||| | ||| ||||| || || || | Sbjct 819 TCTCTTTAGGATCCCTT---ATATAAGTGTCAATTAATAAAGAGTACATCTCTGAATGAA 763 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029 ||||| || || || ||||| ||||| || || || ||||| | | ||| ||||| Sbjct 762 CATTTTCCATTGCAATTTGAAACCCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTT 703 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 | || | || | ||||| |||||||||||||||||| ||| ||||| ||||| | Sbjct 702 GTGAGAAACGCTCCACTAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTA 643 Query 14090 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 | | | ||| ||||| | || ||| || || | | | | |||||| || || |||| Sbjct 642 AGACATGTTTGATAAAATGTTTCTCGCAATCTTTTAATGTCTCCCAATCTGCCAAGTCCT 583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476957781334320