Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25] 272,638 sequences; 241,555,716 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq38040 147 2e-30 seq22409 118 8e-22 seq49094 104 2e-17 >seq38040 Length=2861 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| |||||||| |||||||| ||| || | | ||||||| ||||| Sbjct 2489 TGGAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAATTGC 2548 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||||||||| || ||||| ||||||||||| |||||| Sbjct 2549 TTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTA 2608 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| || || || | ||| || ||||| ||||| ||||| ||||| Sbjct 2609 GCCTTAACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAACGTAATTGTTTTTCCTGTA 2668 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||||||||||||| Sbjct 2669 AGTGTTTTAACAAAAATTTGCATA 2692 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| ||||| || || |||||||| | | | | | ||||| Sbjct 1799 ACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTCC 1858 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| |||| | ||| |||||||| || || ||||| || || Sbjct 1859 AATTGCTTACCAGCAAATATGAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTATCCTGT 1918 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| | || || || || |||||| || | ||||||||| || Sbjct 1919 ATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTTT 1978 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| ||||| ||||| ||||||||| Sbjct 1979 CCTGTCAATGTTTTCACAAATATTTGCATA 2008 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| ||| | | |||| |||||||| || |||||||| || ||||| || | Sbjct 2237 CCTCCTCGCAAACGCAGTACTAGGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCAGAT 2296 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| ||||| || ||||| | || | ||||||||| || || Sbjct 2297 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGG 2356 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||||| ||||||| |||| || || || || || Sbjct 2357 ATACCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGATGGCTCCACC 2416 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || ||||| || ||||| || || || ||||| ||||||||| Sbjct 2417 TCTAGAGTTATGGTCTTTCCTGTTAGTGTCTTGACAAATATTTGCATA 2464 >seq22409 Length=1756 Score = 118 bits (130), Expect = 8e-22 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATTGTTTGC 15224 ||||| || ||||| |||||||| || | ||| || | ||||||| ||||| | Sbjct 1467 GTGGATTCCTTTTGAATGTTGTAGTCAG--ACAATGTACGTCCATCTTCTAGCTGTTTAC 1524 Query 15225 CAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTC 15283 |||| | ||||||||||| ||||| |||||| ||||| || || |||||| ||| Sbjct 1525 CAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGAATTTTCGCT- 1583 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| ||||||| ||||| ||| || || | ||||||||||||||| || || Sbjct 1584 TTTACATTTTCTATAGTATCAGAGGCTTCCACCTCGAGGGTAATGGTTTTACCCGTAAGG 1643 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| Sbjct 1644 GTCTTGACGAAAATTTGCAT 1663 >seq49094 Length=1117 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||||| ||||| || || | || | | ||||||||| ||||| ||||||||| Sbjct 611 TCTTCTAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGAATACCTTCTTTG 552 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||| ||| ||||||| ||||| | ||| || || || ||||| Sbjct 551 TCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTAATC 492 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||||||||||||||| Sbjct 491 GTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 457 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||| || |||||| | ||||| | ||||||||| || || ||||| ||| Sbjct 1067 TCTTCCAGTTGCTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGAGGGATGCCTTCCTTG 1008 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| ||||| ||| ||| |||| || || || | ||| || ||||| ||||| Sbjct 1007 TCTTGAATCTTTGC-CTTAACATTTTCGATTGTGTCAGAAGCTTCCACCTCTAAAGTAAT 949 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| ||||| || ||||||||||| Sbjct 948 AGTTTTACCAGTCAGTGTTTTAACGAAAATTTGCAT 913 Score = 86.0 bits (94), Expect = 5e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||| || || ||| | || || | |||||| || ||||| ||||| ||| Sbjct 155 TCTTCCAGTTGCTTTCCGGCGAAAATTAATCTTTGTTGATCTGGAGGAATGCCTTCCTTG 96 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| ||||| |||||| | || || ||||| | ||| || || || || || Sbjct 95 TCTTGAATCTTTGC-CTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGAT 37 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| ||||| |||||||||||||| Sbjct 36 AGTTTTGCCGGTCAGTGTTTTAACAAAAATTTGCAT 1 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | || ||||| || | || || || || || || ||||| || | Sbjct 455 CCACCTCTCAGCCGTAGTACTAAGTGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAT 396 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || || ||||| | || | | |||||| || ||| Sbjct 395 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGTTGATCTGGGGGA 336 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || |||||| ||| ||| |||| || ||||| | ||| || Sbjct 335 ATGCCCTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 276 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || || || |||||||| || ||||||||||||||||| Sbjct 275 TCCAGTGTGATAGTCTTGCCTGTCAGTGTCTTTACAAAAATTTGCAT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360975759782358