Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25]
272,638 sequences; 241,555,716 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq38040 147 2e-30
seq22409 118 8e-22
seq49094 104 2e-17
>seq38040
Length=2861
Score = 147 bits (162), Expect = 2e-30
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| |||||||| |||||||| |||||||| ||| || | | ||||||| |||||
Sbjct 2489 TGGAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAATTGC 2548
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||||||||||||| || ||||| ||||||||||| ||||||
Sbjct 2549 TTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTA 2608
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| |||| || || || | ||| || ||||| ||||| ||||| |||||
Sbjct 2609 GCCTTAACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAACGTAATTGTTTTTCCTGTA 2668
Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364
|| ||||| |||||||||||||||
Sbjct 2669 AGTGTTTTAACAAAAATTTGCATA 2692
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||||||||| ||||| || || |||||||| | | | | | |||||
Sbjct 1799 ACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTCC 1858
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| || ||||| |||| | ||| |||||||| || || ||||| || ||
Sbjct 1859 AATTGCTTACCAGCAAATATGAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTATCCTGT 1918
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| ||| ||| | || || || || |||||| || | ||||||||| ||
Sbjct 1919 ATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTTT 1978
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||||| ||||| ||||| |||||||||
Sbjct 1979 CCTGTCAATGTTTTCACAAATATTTGCATA 2008
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||| ||| | | |||| |||||||| || |||||||| || ||||| || |
Sbjct 2237 CCTCCTCGCAAACGCAGTACTAGGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCAGAT 2296
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | ||||| ||||| || ||||| | || | ||||||||| || ||
Sbjct 2297 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGG 2356
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||||||||| ||||| ||||||| |||| || || || || ||
Sbjct 2357 ATACCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGATGGCTCCACC 2416
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||| || ||||| || ||||| || || || ||||| |||||||||
Sbjct 2417 TCTAGAGTTATGGTCTTTCCTGTTAGTGTCTTGACAAATATTTGCATA 2464
>seq22409
Length=1756
Score = 118 bits (130), Expect = 8e-22
Identities = 149/200 (75%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATTGTTTGC 15224
||||| || ||||| |||||||| || | ||| || | ||||||| ||||| |
Sbjct 1467 GTGGATTCCTTTTGAATGTTGTAGTCAG--ACAATGTACGTCCATCTTCTAGCTGTTTAC 1524
Query 15225 CAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTC 15283
|||| | ||||||||||| ||||| |||||| ||||| || || |||||| |||
Sbjct 1525 CAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGAATTTTCGCT- 1583
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| ||||||| ||||| ||| || || | ||||||||||||||| || ||
Sbjct 1584 TTTACATTTTCTATAGTATCAGAGGCTTCCACCTCGAGGGTAATGGTTTTACCCGTAAGG 1643
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 1644 GTCTTGACGAAAATTTGCAT 1663
>seq49094
Length=1117
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||||| ||||| || || | || | | ||||||||| ||||| |||||||||
Sbjct 611 TCTTCTAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGAATACCTTCTTTG 552
Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
|| |||||| ||| ||| ||||||| ||||| | ||| || || || |||||
Sbjct 551 TCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTAATC 492
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| || ||||| || |||||||||||||||||
Sbjct 491 GTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 457
Score = 104 bits (114), Expect = 2e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| | ||| || |||||| | ||||| | ||||||||| || || ||||| |||
Sbjct 1067 TCTTCCAGTTGCTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGAGGGATGCCTTCCTTG 1008
Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| ||| ||||| ||| ||| |||| || || || | ||| || ||||| |||||
Sbjct 1007 TCTTGAATCTTTGC-CTTAACATTTTCGATTGTGTCAGAAGCTTCCACCTCTAAAGTAAT 949
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||||||| ||||| ||||| || |||||||||||
Sbjct 948 AGTTTTACCAGTCAGTGTTTTAACGAAAATTTGCAT 913
Score = 86.0 bits (94), Expect = 5e-12
Identities = 114/156 (73%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| | ||| || || ||| | || || | |||||| || ||||| ||||| |||
Sbjct 155 TCTTCCAGTTGCTTTCCGGCGAAAATTAATCTTTGTTGATCTGGAGGAATGCCTTCCTTG 96
Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| ||| ||||| |||||| | || || ||||| | ||| || || || || ||
Sbjct 95 TCTTGAATCTTTGC-CTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGAT 37
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| || ||||| ||||| ||||||||||||||
Sbjct 36 AGTTTTGCCGGTCAGTGTTTTAACAAAAATTTGCAT 1
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||| | || ||||| || | || || || || || || ||||| || |
Sbjct 455 CCACCTCTCAGCCGTAGTACTAAGTGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAT 396
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | ||||| | || || ||||| | || | | |||||| || |||
Sbjct 395 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGTTGATCTGGGGGA 336
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || ||||| || |||||| ||| ||| |||| || ||||| | ||| ||
Sbjct 335 ATGCCCTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 276
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | || || || || |||||||| || |||||||||||||||||
Sbjct 275 TCCAGTGTGATAGTCTTGCCTGTCAGTGTCTTTACAAAAATTTGCAT 229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360975759782358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |