Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25] 272,638 sequences; 241,555,716 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq51813 214 1e-50 seq80369 113 4e-20 seq89394 102 7e-17 seq49094 100 2e-16 seq22409 93.3 3e-14 seq98588 89.7 4e-13 >seq51813 Length=3444 Score = 214 bits (236), Expect = 1e-50 Identities = 597/905 (66%), Gaps = 21/905 (2%) Strand=Plus/Plus Query 100328 TAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 100386 ||||| || || ||||||| |||||| || | || || || | ||| |||||||||| Sbjct 378 TAATCCACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 437 Query 100387 --ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 100444 | |||||| ||| || | ||||| |||||||| || || ||||||||||| Sbjct 438 GGAATGTTGTCTTCGTAAT---CATGAACGCCAGTCCAACCACGACCATACATGGCAACA 494 Query 100445 CCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAATTTCACGGCGTGATCC 100504 || | | ||| || || | ||| ||||| | | |||| || || || Sbjct 495 CCTAATACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAATATTTTACTCCGAAGTCA 554 Query 100505 GTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAAA 100564 | |||| || || || ||||| |||||||| | | ||||| | || | | Sbjct 555 GATGTGTAAGTTTCCTTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGA 614 Query 100565 TCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCAT-AAGAAATATTTTATCGAGAAG 100623 | ||||||||||| || || || || |||||||| |||||| || | ||| | | Sbjct 615 GTGTCATTTGACCAGGCTCCCTTGAAGTCATAGCTCATCAAGAAA-ATATGATCCATATA 673 Query 100624 CTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCT 100683 ||||| || | |||| | || || ||||| || | || || || || || Sbjct 674 ATTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGA 733 Query 100684 TGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGT-AGCTGGTCCAGCATCGCGCGCAATT 100742 ||||| ||||| | ||||| | | || || |||| || |||||| | || |||| Sbjct 734 AGTCAATTCGTATTTCTTGCCATTCTT-AGCTGAGAGCTCATCGAGCATCTCACGTAATT 792 Query 100743 CCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTC-GGGTTG 100801 | |||| ||| | || || | || || | | || || ||| ||||| Sbjct 793 CTTTCATCAAACTTACATAGCAATCACCATCT---TCTGGGCTACCGAG-GTCAGGGTTA 848 Query 100802 GCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACACC 100861 || |||||||| || ||||||||||| || || || || || || || || ||||| Sbjct 849 GCACCTTTGCCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATGTT 908 Query 100862 TGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTGCATGAAA 100921 | | ||| ||||| || || | |||||| || | | | | | | | ||| Sbjct 909 AGAAGAAACTCCTTTACTGACTGCACAAAT---CGTGTTCTCTTAGATTTATCAACTAAA 965 Query 100922 TAGAAC---GGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGA 100978 |||| || |||| | |||||| || || || || || ||||| || | | ||| Sbjct 966 AAGAAAAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCCGGG 1025 Query 100979 TTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCATGCG 101038 ||| | || | ||||| || ||||| ||||| ||||| ||||||||||||| Sbjct 1026 CGGGCTTGTTTTAGTGACATTAATTGGCCGAAGTTGCCTTTGTAGGGCTCGTTCCATGAA 1085 Query 101039 GACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTTGAAA 101098 |||| || ||||| |||||||||| ||| ||||| |||||||| || | |||||| || Sbjct 1086 GACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTAAAG 1145 Query 101099 TCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGG 101158 || ||| || | ||||| || ||||| |||| |||||||| || ||| | | Sbjct 1146 TCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAG 1205 Query 101159 GCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGAGAGA 101218 ||| || | |||||| |||||||||||||| || || || || | || ||| | ||| Sbjct 1206 CTGTCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGTAAGA 1265 Query 101219 TTGGG 101223 || || Sbjct 1266 TTAGG 1270 >seq80369 Length=3501 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 |||||||| | |||| ||| ||||| || ||||||||||| | | ||| | || Sbjct 407 CTTAACACAAGATGCAGTGTACTTTCCTTCTGGATATTGTAATCAGATAGCGTTCTAGCA 348 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||| || || ||||| ||| | ||||| ||||||||||| || | |||||| ||| Sbjct 347 TCCTCGAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTG 288 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || | || || |||||| | ||| |||||| | || ||| ||| | || || Sbjct 287 TCTTCTATCTTTGCTTTTACATTCTCGATAGTATCACTAGACTCTACTTCCAATGTTATT 228 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| ||||| ||||| || ||||| Sbjct 227 GTCTTTCCTGTTAATGTTTTAACAAAGATCTGCAT 193 >seq89394 Length=1369 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| || || ||||| |||||||| ||| || || || || ||||||||||| Sbjct 527 CGCAGGAAGGGACATTGGGGCGCCCACCGTTGGTGGTCCTTGGCGGGATCGTCGCCCGCT 468 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| |||||||| |||| | Sbjct 467 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGG 408 Query 25350 TAGTAGAACCCATT 25363 || ||||| || || Sbjct 407 TAATAGAAGCCGTT 394 >seq49094 Length=1117 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || || || | |||||| ||||| ||||| ||||||||||| || | Sbjct 457 TTCCACCTCTCAGCCGTAGTACTAAGTGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 398 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| || ||||| Sbjct 397 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGTTGATCT 342 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | ||||||||| || |||||| || || | | | ||||| || Sbjct 341 GGGGGAATGCCCTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCT 282 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| ||| | || || || || ||||| | || || ||||||||||||||| Sbjct 281 TCCACTTCCAGTGTGATAGTCTTGCCTGTCAGTGTCTTTACAAAAATTTGCATT 228 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||| ||||| ||||||||||| || | || ||| | || || ||||| Sbjct 887 TGCAAGGTAGATTCCTTCTGAATATTGTAGTCTGACAGTGTACGTCCATCTTCGAGCTGC 828 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||| ||||| |||||||| ||| | ||||||||| || |||||| Sbjct 827 TTTCCAGCAAAAATTAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTT 768 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | | | ||||| || ||| ||| | || || || || ||||| Sbjct 767 GCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAGTGTGATAGTCTTGCCTGTC 708 Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042 | || || ||||||||||||||| Sbjct 707 AGTGTCTTTACAAAAATTTGCATT 684 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||| || || ||||| |||||||| ||||| | || || | || || Sbjct 666 CACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGACAGCGTACGACCATCTTC 607 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || ||| ||||||| ||||| || || || | || |||||||| Sbjct 606 TAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTG 547 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | ||||| || ||| ||| | ||||| ||||| Sbjct 546 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTAATCGTTTT 487 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || || ||||||||||||||| Sbjct 486 GCCAGTCAGTGTCTTTACAAAAATTTGCATT 456 >seq22409 Length=1756 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| || || ||||||||||| ||||| || | || ||| | || || |||||| Sbjct 1461 TGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGCTGT 1520 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| ||| | || | | ||||| || || | || || || || ||||||| Sbjct 1521 TTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGAATTTTC 1580 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGC-TCCGTTTCGACGGTAATGGTTTTACCTGT 19017 |||||| | | | |||||| |||| ||| |||| ||||||||||||||| || Sbjct 1581 GCTTTTACATTTTCTATAGTATC-AGAGGCTTCCACCTCGAGGGTAATGGTTTTACCCGT 1639 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 | || ||||| |||||||||||| Sbjct 1640 AAGGGTCTTGACGAAAATTTGCATT 1664 >seq98588 Length=355 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||| || |||||||| ||||| || | | || | || Sbjct 325 AATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCT 266 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| || ||||| ||| | ||||| | ||||||||| || | |||||||||||| Sbjct 265 TCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCT 206 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| |||||| | | | |||||| || ||| ||| | |||||||| Sbjct 205 TGGATTTTAGCTTTTACGTTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGTC 146 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||| ||||| |||||||| ||||| Sbjct 145 TTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413195267605372