Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25] 272,638 sequences; 241,555,716 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq22409 102 6e-17 seq38040 96.9 2e-15 seq49094 87.8 1e-12 >seq22409 Length=1756 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||||||| || || || ||| ||| |||| || | ||||| || ||||| Sbjct 1473 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGCTGTTTACCAGCAAAG 1532 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||||||||| | || | |||||| |||||| |||||| ||| || | Sbjct 1533 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGAATTTTCGCTTTTACATTT 1592 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | |||||| | | ||||| |||| ||||| |||||||| || | ||||| || Sbjct 1593 TCTATAGTATCAGAGGCTTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACG 1652 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 1653 AAAATTTGCAT 1663 >seq38040 Length=2861 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||| ||| | | ||||| || || ||| ||||||||||| || || ||| Sbjct 2464 ACCTCCTCGCAAACGCAGCACCAGGTGGAGGGTGGATTCTTTTTGAATGTTGTAGTCGGA 2523 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | || | || |||||||| ||||| ||||| ||||| ||||| || || |||| Sbjct 2524 AAGGGTGCGGCCGTCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGG 2583 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| |||||| || || | ||| || || | | || || Sbjct 2584 AATGCCTTCTTTGTCTTGAATTTTAGCCTTAACATTTTCAATTGTGTCAGAAGCTTCAAC 2643 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||||||||| || || | || || ||||| |||||||| Sbjct 2644 TTCTAACGTAATTGTTTTTCCTGTAAGTGTTTTAACAAAAATTTGCAT 2691 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||| || | || || | ||| || || ||| ||||| || || || || Sbjct 2008 ACCACCTCGCAGACGTAGTACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 2067 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| |||| |||| ||||| || || || ||||| || | ||||| || || |||| Sbjct 2068 TAAGGTACGCCCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGTTGTTGATCTGGAGG 2127 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||||||| ||| || || || | ||| ||||| | |||||||| Sbjct 2128 AATACCCTCTTTATCTTGAATCTTAGCCTTTACGTTTTCAATGGTATCAGATGGCTCCAC 2187 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||| ||||| |||||||||||||| Sbjct 2188 CTCTAGAGTTATAGTCTTTCCTGTTAGTGTCTTGACAAATATTTGCAT 2235 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| || || || || |||| |||||||| || || ||||| Sbjct 2273 TCTTTTTGAATATTGTAGTCAGATAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAG 2332 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | ||||| || || |||| | ||||||||| ||| ||||| || || | Sbjct 2333 ATAAGACGTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGGATTTTAGCCTTTACATTT 2392 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | |||||||| || | || || || || || |||| ||||| ||| Sbjct 2393 TCAATTGTGTCAGATGGCTCCACCTCTAGAGTTATGGTCTTTCCTGTTAGTGTCTTGACA 2452 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 2453 AATATTTGCAT 2463 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GT 43952 |||||||| || | | ||||| || || ||| |||||| |||||||| ||||| | Sbjct 1780 ACCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCAGA 1839 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || || |||| |||||||| || || |||||||| | || || ||||| | | Sbjct 1840 CAAAGTG-CGACCATCTTCCAATTGCTTACCAGCAAATATGAGACGCTGTTGGTCTGGGG 1898 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| ||||| ||||| || || | | | || || | || || | Sbjct 1899 GGATGCCTTCCTTATCCTGTATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCTA 1958 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | ||||| || || || || || || ||||||||||||||||| Sbjct 1959 CTTCCAGGGTAATGGTCTTTCCTGTCAATGTTTTCACAAATATTTGCAT 2007 >seq49094 Length=1117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || || |||||||||||||| | ||| |||| || | |||||||||||||| Sbjct 647 TCCTTCTGAATATTATAATCTGACAGCGTACGACCATCTTCTAGCTGTTTTCCTGCAAAA 588 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || || ||||| |||| | ||||||||| ||| ||||||| || || | Sbjct 587 ATAAGCCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTT 528 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||||| || | ||||| ||||| || || | ||||| ||| Sbjct 527 TCTATTGTATCAGAAGCTTCCACTTCCAATGTAATCGTTTTGCCAGTCAGTGTCTTTACA 468 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 467 AAAATTTGCAT 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353598753638424