Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25] 272,638 sequences; 241,555,716 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq271029 455 9e-124 seq249728 217 4e-52 seq177630 152 1e-32 seq262377 120 8e-23 seq272271 82.4 2e-11 >seq271029 Length=527 Score = 455 bits (504), Expect = 9e-124 Identities = 426/544 (78%), Gaps = 20/544 (4%) Strand=Plus/Plus Query 25548 TCTCAATTCTGACGTTTACCCCGCTGATGGGGATGTCTGACGTTGTTACCAAGTTCCTGA 25607 |||| | ||||| || |||||| | ||||| ||||| ||||| || || |||||| | | Sbjct 1 TCTCTTTGCTGACCTTCACCCCGTTAATGGGTATGTCAGACGTCGTAACGAAGTTCATAA 60 Query 25608 AGAATCCCAGTAAGTCGCAGAAAGTGGTCAACATGACCATCTATGATGCTGAGCACTACA 25667 |||| || || ||| |||||| |||||||| |||||||||||||| || || ||||||| Sbjct 61 AGAACCCTAGCAAGATGCAGAAGGTGGTCAATATGACCATCTATGACGCCGACCACTACA 120 Query 25668 CCGACGAGCAGAAAGAGCAAATCATAGCATCCTATCCTGAGCATGAGAGAGAGGCACGTG 25727 ||||||||||||||||||||||||| || || ||||||||||||||| | || || |||| Sbjct 121 CCGACGAGCAGAAAGAGCAAATCATTGCCTCTTATCCTGAGCATGAGCGTGAAGCGCGTG 180 Query 25728 CTCGTGGTATTCCTACGATGGGTAGCGGTCGAATATTCCAGATACCGGAAGAGACGATTA 25787 | || ||||| || || |||||||||||| | || | ||| ||||| ||||| || || | Sbjct 181 CGCGGGGTATACCGACAATGGGTAGCGGTAGGATTTACCAAATACCTGAAGAAACTATCA 240 Query 25788 AGTGCCAGCCGTTTGAGTGTCCCGATCACTTCTATGTTATCGACGCTCAGGACTTCGGCT 25847 |||||||||||||||| ||||||||||||||||| |||||||||| || ||||| |||| Sbjct 241 AGTGCCAGCCGTTTGAATGTCCCGATCACTTCTACGTTATCGACGGGCAAGACTTTGGCT 300 Query 25848 GGAACCACCCGCAAGCTCACATTCAGCTTTGGTGGGACAAAGACGCAGATGTTTTCTATC 25907 |||| ||||||||| |||| |||| ||||| || ||||||| Sbjct 301 GGAATCACCCGCAA--TCAC------------NNGGACGAAGAC------GTCTTCTATC 340 Query 25908 TGGCGCGTGTATGGAAGAAATCAGAGAACACTGCCGTTCAGGCATGGGGTGCTGTTAAGT 25967 | || || || ||||||||||| ||||||||||| || ||||| ||||| ||| ||||| Sbjct 341 TTGCTCGAGTGTGGAAGAAATCTGAGAACACTGCTGTGCAGGCTTGGGGGGCTACTAAGT 400 Query 25968 CGTGGGCTAACAAAATACCTGTCGCGTGGCCTCATGACGGTCACCAACACGAAAAGGGCG 26027 | ||| | ||||| |||||||| || |||||||| || || ||||||||||| || |||| Sbjct 401 CATGGTCCAACAAGATACCTGTGGCTTGGCCTCACGATGGACACCAACACGAGAAAGGCG 460 Query 26028 GTGGTGAGCAACTTAAAACCCAATATGCGGATGCCGGGTTCTCTATGCTTCCCGATCACG 26087 | |||||||| || || | ||||| || || || || ||| ||| | || || || | Sbjct 461 GCGGTGAGCAGCTGAAGAAACAATACGCCGACGCTGGCTTCATGATGTTACCGGAGCATG 520 Query 26088 CAAC 26091 | || Sbjct 521 CCAC 524 >seq249728 Length=458 Score = 217 bits (240), Expect = 4e-52 Identities = 286/395 (72%), Gaps = 25/395 (6%) Strand=Plus/Minus Query 26986 CCCAACGATTGGGTATTTCCATGGCTGACGCAGGA-CACAATTCAGATCGCTGAGTTTTA 27044 ||||||||||||||||| || |||||||| ||| | | | | | |||||||||| ||| Sbjct 372 CCCAACGATTGGGTATTCCCTTGGCTGAC-CAGTAACTCGCTGTATATCGCTGAGTATTA 314 Query 27045 CGAAGTGGTCGAGAAGAAAGAGACGGCGTTTATCTACCAAGACCCGGTTACGGGTGAGCC 27104 |||||| | |||||||||||| || | |||||| | |||||| | || |||||||| Sbjct 313 CGAAGTCGAAGAGAAGAAAGAGGTCGCTTACATCTACGAGGACCCGCTAACCGGTGAGCC 254 Query 27105 GGTAAGCTACTTTAAGCGCGATATTAAAGACGTCATCGACGACCTGGCTGATAGTGGATT 27164 || |||||||| |||||| || | ||||| |||| | Sbjct 253 AGTTAGCTACTTCAAGCGCATGCTT------------GCCGACC---------GTGGCAT 215 Query 27165 TATCAAAATTGCAGAGCGCCAGATTAAGCGTCGCCGGGTATACAAATCTATTATCACCTG 27224 | || |||| ||| ||||||| || ||| |||| || ||| | ||| |||| | Sbjct 214 GAAGAAGATTGGCGAGAAGAAGATTAAACGCCGCAGGGTGTATAAAACGATTCTCACATC 155 Query 27225 CACCGCAGTACTGAAAGATAAGCA-ACTCATTGCTGGAGAACATATCCCCATTGTTCCGG 27283 |||||||| ||||||| ||| | | || || || || ||| | || ||||| || | Sbjct 154 TTCCGCAGTATTGAAAGACC-GCACATTGATAGCCGGTGAGCATCTGCCGATTGTGCCAG 96 Query 27284 TATTCGGAGAGTGGGGCTTCGTTGAAGATAAAGAAGTGTATGAGGGGGTCGTCCGCCTGA 27343 | ||||| |||||||| ||||| || ||||||||||| |||||||| |||| | |||| Sbjct 95 TGTTCGGCGAGTGGGGATTCGTCGAGGATAAAGAAGTCTATGAGGGTATCGTTAGGCTGA 36 Query 27344 CAAAAGACGGTCAGCGTCTGCGCAACATGATTATG 27378 | |||||||| ||||| |||||||||||||||||| Sbjct 35 CGAAAGACGGCCAGCGACTGCGCAACATGATTATG 1 >seq177630 Length=801 Score = 152 bits (168), Expect = 1e-32 Identities = 205/284 (72%), Gaps = 1/284 (0%) Strand=Plus/Plus Query 31335 CAAAGCCTAAGGCGGAAAGCGATGCAGATAAAGACTAAAGGCGATCTGGTCAGGGCGGCG 31394 ||||||| |||| || | |||||| || |||| || || || | || | ||||| Sbjct 508 CAAAGCC-AAGGTGGTGACCGATGCTGACTCAGACGAAGGGTGACATTGTTCGTGCGGCA 566 Query 31395 CTGCGTAAGCTTGGTGTAGCATCAGATGCAACTCTCACTGATGTTGAGCCACAGTCTATG 31454 ||||| ||||| ||| | || || || || || || |||||||| |||||||| || ||| Sbjct 567 CTGCGCAAGCTAGGTATCGCCTCTGACGCCACGCTAACTGATGTCGAGCCACAATCAATG 626 Query 31455 CAGGATGCCGTAGATGACCTTGAAGCGATGATGGCTGAGTGGTATCAGGACGGGAAAGGC 31514 |||| | ||| | ||||| ||| |||||||||||| |||||||||||||| ||| Sbjct 627 GAGGACGGCGTTAACGACCTCGAAATGATGATGGCTGAATGGTATCAGGACGGTCGAGGG 686 Query 31515 ATTGTTACCGGGTATGTATTCTCAGATGATGATAACCCGCCATCCGAAGGTGACGACCAC 31574 ||| | || || || | || | |||| || | || || | ||||||||||||||| Sbjct 687 ATTATCACTGGCTACGCTTTTGCTAATGACGACGATCCTCCGGCAGAAGGTGACGACCAC 746 Query 31575 GGTCTTCGCTCAAGCGCAATCAGCGCAGTATTCCACAATCTGGC 31618 | || || ||| | || ||||||||| |||| || || || Sbjct 747 TCGATGCGGTCTAGCTCGATTAGCGCAGTAGTCCATAACCTCGC 790 Score = 150 bits (166), Expect = 5e-32 Identities = 251/367 (68%), Gaps = 18/367 (5%) Strand=Plus/Plus Query 30442 CCTGAGCAACGCGCCTACGCTAACGTTAACACCTCACTGGCTGATGCAATGGCGGTGAAC 30501 || ||| ||||| | || || ||||| ||||| | || |||||| | ||| | ||| Sbjct 1 CCAGAGTAACGCACTTATGCCAACGTGAACACTACGCTTGCTGATAAGACGGCAATCAAC 60 Query 30502 ATCCTGAACGTT--AAGGATGCCCGTACCAACGTGTTCTGGGCTGATGACGCCATCCGTA 30559 ||| ||||||| || | || || ||||| |||||||| ||||| | ||||||| Sbjct 61 ATCTTGAACGTGGCAACG--GCTAAAACTAACGTTTTCTGGGCAGATGATTCTATCCGTA 118 Query 30560 TTGTGTCTCAGCCGATTCCTGCTAACCACGAATTGTTTGCAGGTATGAAAACTACCTCAT 30619 | ||||||||||| ||||| || ||| || ||||||| || |||||||| || || Sbjct 119 TCGTGTCTCAGCCTATTCCGGCCAACAGTGACCTGTTTGCCGGGATGAAAACGACTTCGN 178 Query 30620 TCAGCATCCCGGATGTCGGCCTTAACGGTATCTTCGCTACGCAGGGTGATATTTCCACCC 30679 || | || || ||||| || || | ||| Sbjct 179 NNNNNNNNNNNNNNNNNNN-----------TCATGGCGACTCAGGGCGACATCGCAACCT 227 Query 30680 TGTCCGGCCTGTGCCGTATTGCGCTGTGGTACGGCGTAAACGCGACACGACCGGAAGCAA 30739 || |||| ||||||||||| |||||||| ||||| ||||| || || || ||||||| Sbjct 228 TGACCGGTAAATGCCGTATTGCTCTGTGGTATGGCGTCAACGCAACCCGCCCTGAAGCAA 287 Query 30740 TCGGTGTTGGCCTGCCTGGTCAGACTGCGTAACTAACAGGGGCTTCGGCCCCTTTCTTAT 30799 |||| || ||||| ||||||| || || ||| | | |||||||||||||||| || | Sbjct 288 TCGGCGTGGGCCTCGCTGGTCAAACCGCTTAA-TCAATGGGGCTTCGGCCCCTT--TTCT 344 Query 30800 TTGAGGT 30806 ||||||| Sbjct 345 TTGAGGT 351 >seq262377 Length=537 Score = 120 bits (132), Expect = 8e-23 Identities = 268/398 (67%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 32485 GCGCAGCCATCGTTAATGGTACAGAAGGGGATTGCCGGAACATACTGTAAAA--CGCCAT 32542 || ||||| || | ||||| ||||||||||| || ||||| | | || ||| || Sbjct 3 GCTCAGCCGTCACTGATGGTCCAGAAGGGGATCGCTGGAACGTTCGCCAAGTGTCGCTAT 62 Query 32543 TCGCTGATTCATATGCATTCATCAGTCACCCGGCTACTGGCGCACCTTCCGTCTACATCA 32602 || || ||| | || || | || ||||||| | || | ||||| || || | | Sbjct 63 --GCAGACTCACACGCCTTTGTTAGCAACCCGGCCAACGGGTCGCCTTCTGTTTATGTGA 120 Query 32603 TCGGGTCAGGGCAGGCTTCACCAATTGCGACGGCCAGTATTGAGAAGATTATCCGCTCAT 32662 | | ||| ||| ||| ||| | ||| |||| | || ||| || | | | Sbjct 121 TAAGCCAAGGCTCTGCTACACAAATCTCCTCGGTCAGTGTCGATAAGGTTCTGAGAAGTT 180 Query 32663 ACACAGCTGAAGAACTGGCGACTGGTGTA-ATGGAGACTTTGCGCTTCGATTCTCATGAG 32721 ||| || || |||| | |||| | |||||| | || || |||||| ||| ||| Sbjct 181 ACAGCGCCACTGATTTGGCT-CAGGTGCACATGGAGTCCTTACGATTCGATGGTCACGAG 239 Query 32722 CTTCTGATTATTCATCTCCCTCGTCATGTTCTGGTTTACGACGCATCGTCAAGTCAGAAC 32781 || | || || || || || | |||| || || ||||| || ||||||||||| Sbjct 240 CTAATCATCATCCACCTACCGAATGATGTACTTTGCTATGACGCCTCAGCAAGTCAGAAC 299 Query 32782 GGACCGCAATGGTGTGTGCTGAAAACAGGGCTTTACGATGATGTATATCGTGCTGTCGAC 32841 || |||||||||| | |||||||| || || || ||| | |||||||| ||||| Sbjct 300 GGTCCGCAATGGTCAATCCTGAAAACTGGACTCTATGATACTCCGCATCGTGCTATCGAC 359 Query 32842 TTCATGTATGAAGGCAACCAGATAACGTGCGGCGATAA 32879 ||||||||||| || |||||||| || ||||| || || Sbjct 360 TTCATGTATGAGGGTAACCAGATTACCTGCGGAGACAA 397 >seq272271 Length=345 Score = 82.4 bits (90), Expect = 2e-11 Identities = 167/254 (66%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 28028 TGCTGTTGCTTCAGTACTTCACACTGCTTGATGGCAAAGGCGTTGAGATGATGCGCGATT 28087 ||||||| ||||||||| | || | || || || |||||| ||||||| | ||||||| Sbjct 17 TGCTGTTACTTCAGTACCTGACGTTACTCGACGGTAAAGGCATTGAGATTACTCGCGATT 76 Query 28088 ATGCCAATAAGCAGCTTATTCAGATGGGCGTTAAGAAGCCAGAAACGCCTGAAGAGCAGC 28147 | || || |||||||| || | ||| | ||| |||| || || | || ||||||| Sbjct 77 ACGCTAACAAGCAGCTAATCGTGCAGGGACTCAAGCAGCCTGAGACAGCCGAGGAGCAGC 136 Query 28148 AATGGTTAGTAGAGGCGCAACAAGC--CAAACAAGGTCAACAAGACCCGGCAATGGTTCA 28205 | ||| | |||||| || ||||| |||| Sbjct 137 AGTGGCTGCAAGAGGCTCAGCAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCA 196 Query 28206 GGCTCAGGGCGTACTCCTGCAGGGGCAGGCTGAACTGGCTAAAGCTCAGAACC-AGACGC 28264 |||||| ||||| | ||||| || ||||| || || ||||||||||||| | | || Sbjct 197 GGCTCAAGGCGTGTTACTGCAAGGTCAGGCAGATATGCAGAAAGCTCAGAACCAACAGGC 256 Query 28265 TGTCCCTGCAAATC 28278 || |||||||||| Sbjct 257 TG-ACCTGCAAATC 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131901172829868