Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25] 272,638 sequences; 241,555,716 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq75436 107 2e-18 seq93941 91.5 2e-13 seq56742 89.7 6e-13 >seq75436 Length=4605 Score = 107 bits (118), Expect = 2e-18 Identities = 333/508 (66%), Gaps = 18/508 (4%) Strand=Plus/Plus Query 164491 ATaaaaaaaTTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGC 164550 || ||||||||||| | |||| ||||||| || | || ||||||| || || Sbjct 963 ATTAAAAAATTAGGTATTCCACATGTAAAAGGTATCATGTTGTATGGACCGCCAGGAACT 1022 Query 164551 GGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTT-TTAAATCGCGACCCGTTAAAAT 164609 || ||||| | || ||| | | | | | || ||| || | | | || || || Sbjct 1023 GGAAAAACGCTGATTGCTAAAAGATTAGGT-AATCTTCTTGACACTAGGCCTCCAAAGAT 1081 Query 164610 TGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAA 164669 ||| ||||| |||||| | || ||||| ||| | || | |||| ||| |||| || Sbjct 1082 TGTAAATGGACCTGAAATTTTAAACAAGTATATTGGACAAAGTGAAGAAAATATTAGGAA 1141 Query 164670 GTTGTTTCAGGAGGCTGAAGAAGAACAAAAG--AAAGCAGGTTTAGCTAGTAAATTACAT 164727 |||||| | || || || |||||| ||| ||| ||| | || | |||| Sbjct 1142 CTTGTTTAAAGATGCGGAGGAAGAATGGAAGGTAAAAAAGGAGGAA--AGCGCTTCACAT 1199 Query 164728 GTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGATAATAT-TATTCA 164786 |||| |||||||||| ||||||| ||||||||||| | || | || ||||| Sbjct 1200 ATTATAATTTTTGATGAAGTAGATGCAATTTGCAAAAAAAGAGGAAGTTCCATGAATTCA 1259 Query 164787 TGA--TGCA------GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTA 164838 || || | || |||||||| || | ||| || || ||||| ||||| ||| Sbjct 1260 GGAGTTGGAGATCAGGTTGTTAATCAATTATTAAGTAAGATGGACGGTGTGGAATCTTTA 1319 Query 164839 AATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTA 164898 | ||| ||||||| | || ||||| || || || | ||||||||||| || ||| Sbjct 1320 GACAATGTTTTAATATTCGGAATGACTAATAGATTAGACCTGATTGATGATGCGTTGTTA 1379 Query 164899 CGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTT 164958 | || || | || ||| | | ||||||| ||||| || ||||| | | || Sbjct 1380 AGGCCAGGAAGGTTCGAAATTCATTTAGAAATCTCTTTACCTGATGAAGAATCAAGATTT 1439 Query 164959 CAAATTTTAAAAGTTCATGTGGCTAAAA 164986 |||| || ||| ||||| ||||||| Sbjct 1440 GAAATCTTTAAAATTCAT---GCTAAAA 1464 >seq93941 Length=976 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 7118 TTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATAT 7177 ||||||| | |||| |||||| || || || ||| ||||||| || | || | || Sbjct 338 TTATAATGTTATGTATTTGATCAATTCCTTGTCCTGCATAATTGGTTTTCGCATCAACAT 397 Query 7178 AATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCT 7230 | ||||||||| ||||||||||||||| ||||||| |||||| | ||||||| Sbjct 398 ATTTAGCTCCACTATGTCTCCATTGAAAGCCATAAACAGGACCAAGATCACCT 450 >seq56742 Length=3759 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 19362 AAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATC 19421 |||| || ||||||||||||||| | | ||||||||| |||||||| || |||| Sbjct 3105 AAATTGGGGATAAGTTTGCTTCTCGTCACGGTCAAAAAGGAACATGTGGAATCCAGTATC 3164 Query 19422 GTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCAC 19481 | |||||||||||||| ||||| || || || ||| ||| | |||||||| || | Sbjct 3165 GACAAGAAGATATGCCGTTTACATGCGAGGGCTTAACGCCAGATATCATTATTAATCCCC 3224 Query 19482 ATGCTTTTCCAAGTCGAATGAC 19503 |||| | || ||| ||||| Sbjct 3225 ATGCCATCCCTTCTCGTATGAC 3246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593841283120800