Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25] 272,638 sequences; 241,555,716 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq59246 212 1e-49 seq3260 107 5e-18 seq24578 87.8 4e-12 >seq59246 Length=1357 Score = 212 bits (234), Expect = 1e-49 Identities = 435/641 (68%), Gaps = 7/641 (1%) Strand=Plus/Minus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || ||||| ||| ||| || || || ||| |||||||||||||| |||| || | ||| Sbjct 960 TCCTGCTTCCTTATAGCTATGAAAGACGATAGTATTGAAGGTATTTTTGATACTTTAAAA 901 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639 || ||| | ||||||||| | || || || ||| | || ||| |||| | Sbjct 900 CAATGTGCATTAATTTCTAAATCTGCAGGTGGCATAGGTTTACATACACATTGTATTAGA 841 Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTA 110699 | |||| | |||| || | || || | ||| | ||| || || |||||||| Sbjct 840 GCTCAAGGGTCTTATATAGCTGGCACTAATGGGGTTTCGAATGGTCTAGTGCCAATGTTG 781 Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCA 110756 ||||| | |||| | ||||| | |||||| |||||||||| || | | | || || Sbjct 780 AGAGTGTACAACAATACTGCCAGATATGTAGATCAAGGTGGCAACAAACGTCCCGGTGCA 721 Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||| || || | |||||||||||| | || |||||||| |||||||| || ||| Sbjct 720 TTTGCAATTTACTTAGAACCTTGGCATGCGGACATATTTGAGTTCTTAGAT-TTAAAAAA 662 Query 110817 AATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 | || ||| |||||| |||| | || | |||||||| | ||||| |||| Sbjct 661 GAACACAGGTAAGGAAGAAATGCGAGCTAGAGAACTGTTTTATGCTTTATGGATACCAGA 602 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 | | || |||||| | || || | ||| ||| ||| |||||||||||| || Sbjct 601 TCTGTTTATGAAAAGGGTAGAAAAGGATGAAGATTGGAGTCTCATGTGTCCTCATGATTG 542 Query 110936 TCCTGGTCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAA 110994 ||| || || |||| ||| |||||| | || || ||||| || || | ||||||||| Sbjct 541 TCCCGGCCTTGCTGACTGT-TATGGAGAGGAATTCGAAGAACTATATGCCAAATATGAAG 483 Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054 ||||| |||| |||||| | ||||||||| | ||| ||| | ||| Sbjct 482 AAGAAAAACGGTTTATAAAACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAGAAG 423 Query 111055 CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTA 111114 | ||||| || ||||| || || ||||| |||||||| ||| | || | || || Sbjct 422 CTCAAGTGGAGACTGGTACACCATATATGTTGTATAAGGATGCTTGCAACAGGAAGAGTA 363 Query 111115 ATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||||| ||| | || || ||||| | ||| ||| | ||| Sbjct 362 ATCAAAAAAATCTTGGCACTATTAAATGTAGCAATCTTTGC 322 >seq3260 Length=4440 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| || ||||| |||| | |||||| | || ||| | |||| |||||| | Sbjct 550 CATTTGAGAGATGATGATCTGGTTATTTTCAATCGACAGCCAACTTTGCACAAAATGAGT 609 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| ||| | ||||||||||| | | | |||||||| | ||| | ||| Sbjct 610 ATGATGGGTCACAGGGTCAAAGTATTGCCATGGTCCACATTTCGTATGAATTTGAGTTGC 669 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | |||| |||||||| || ||||| || || ||||||||| | || ||||||||||| Sbjct 670 ACTTCGCCATATAATGCTGACTTTGACGGCGACGAAATGAATTTACACGTACCTCAATC 728 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 ||||||||||| || | || |||| ||||| |||||||| || ||||| ||| ||| Sbjct 235 AAAGGTAAAGAAGGGAGAATCAGAGGAAATCTTATGGGAAAGCGAGTTGACTTTTCTGCC 294 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCC 305100 |||| ||||||||| |||||| || || ||| || || || || ||||||| || Sbjct 295 AGAACTGTAATCACTCCTGATCCT-AATTTACGTATTGATCAAGTAGGAGTGCC 347 >seq24578 Length=4592 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 279281 AATGCTGAATTGATTAATTTAAAACAAATATTGGGATTAGAGCAAGGTAAAAAATACAAA 279340 ||| ||||| | || ||| ||| ||||| | || || |||| |||| |||| || Sbjct 2245 AATCCTGAAATTATCGCTTTGAAAAAAATAATTGGTCTACAGCATAATAAAGAATATAAG 2186 Query 279341 GATACATCAAGTTTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGA 279400 ||||| ||||| || | |||||| | || || || ||||||| |||||| || ||| Sbjct 2185 GATACTTCAAGCCTAAGGTATGGTCATATCATGATAATGACAGATCAAGATCATGACGGA 2126 Query 279401 AGTCACATTAAAGGATTAATACTTAATT 279428 | ||||||||||||||| | |||||| Sbjct 2125 AATCACATTAAAGGATTGCTTATTAATT 2098 Score = 84.2 bits (92), Expect = 5e-11 Identities = 157/228 (69%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 279872 ATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTG 279931 || |||||| | ||||| || | ||| ||||||| ||||||||| | ||| | Sbjct 1648 ATTGATGGTCTTAAACCAGGTCAAAGGAAGGTTATATTTTCTTGTTTCAAGAAAAAGCT- 1590 Query 279932 GTAAAGGA--AATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATC 279989 ||| ||| |||| || || || | || ||| |||| ||| |||||| ||||| Sbjct 1589 -TAAGGGAGAAATTAAAGTACAGCAATTGGTGGGATATATTTCTGAAAATGCAGATTATC 1531 Query 279990 ATCACGGTGAAGCGTCT----CTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATG 280045 ||||||| ||| |||| |||||| | |||||| || | |||||||| ||| | Sbjct 1530 ATCACGGAGAACAGTCTTTATCTTCAA----CAATTGTAAGTTTAGCCCAAGACTTTGTT 1475 Query 280046 GCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCT 280093 | ||||| ||| ||||| |||| || ||||||||||| ||| Sbjct 1474 GGATCAAATAACATAAATTTGCTACTTCCTGTAGGTCAATTTGGCTCT 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182667055939118