Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25] 272,638 sequences; 241,555,716 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq76356 136 4e-27 seq82469 95.1 1e-14 >seq76356 Length=2041 Score = 136 bits (150), Expect = 4e-27 Identities = 216/308 (70%), Gaps = 9/308 (3%) Strand=Plus/Minus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||| | |||||||| ||| || || || | |||||||||||| || || ||| Sbjct 1386 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCCACCACAAAGTCCTCGGGCACGTCCTGC 1327 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || |||||||||||||||||||| || || || ||||||| |||||||| |||||| Sbjct 1326 TGCAGCATGAGCCACATGGCCTCCACATAGTCGCGCGCGTGGCCCCAGTCACGCTTGCTG 1267 Query 159064 TCCATGTTCCCGAGCTCGATG-ACTTTTCCAGAC-----TTTTTCCACTCAGCCAGACCG 159117 || | || |||||||||| | | | || | | | | || || | || Sbjct 1266 TCGAGATTGCCGAGCTCGAGGTGCGATAAGAGGCCGAGGTGTAT---CTTGGCGACGCCC 1210 Query 159118 AGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGA 159177 |||||||||||||||| || || | | ||||| ||| ||| || || |||||| Sbjct 1209 CGCGTGATCTTGCGCGTTACGAAGTTCTCGCCGCGGCGTGGGCTCTCGTGATTGAACAGA 1150 Query 159178 ATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCA 159237 | ||| | || ||||||| | || | ||||||||| || ||||||||| ||| Sbjct 1149 AGCCCGTTGCACGCGAACATGCCGTACGCCTCGCGGTAGTTCACCACTATCCAGTAACCA 1090 Query 159238 AAGAGCTT 159245 | ||||| Sbjct 1089 TACAGCTT 1082 Score = 134 bits (148), Expect = 2e-26 Identities = 217/310 (70%), Gaps = 13/310 (4%) Strand=Plus/Minus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| || | |||||||| ||| |||||| | | ||| || || ||||| | |||| Sbjct 1386 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCCACCACAAAGTCCTCGGGCACGTCCTGC 1327 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||||| | || ||||| ||||| |||||||| |||||| Sbjct 1326 TGCAGCATGAGCCACATGGCCTCCACATAGTCGCGCGCGTGGCCCCAGTCACGCTTGCTG 1267 Query 124614 TCCAGGTTTCCGAGCTCGATTGGC-----TTGGCCGTCTTGTTCCACTCCGCCAAACCCA 124668 || || || |||||||||| || ||||| ||| || || | ||| Sbjct 1266 TCGAGATTGCCGAGCTCGAGGTGCGATAAGAGGCCGAGGTGT--ATCTTGGCGACGCCCC 1209 Query 124669 GTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACA 124725 | || ||||||||||| || || |||| ||||| || |||||| ||||||| Sbjct 1208 GCGTGATCTTGCGCGTTACGAAGTTCTCG---CCGCGGCGTGGGCTCTCGTGATTGAACA 1152 Query 124726 GAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACC 124785 ||| || | ||||| ||||| ||||||| |||||||||||| | ||||| || | Sbjct 1151 GAAGCCCGTTGCACGCGAACATGCCGTACGCCTCGCGGTAGTTCACCACTATCCAGTAAC 1092 Query 124786 CAAAGAGCTT 124795 || | ||||| Sbjct 1091 CATACAGCTT 1082 >seq82469 Length=4361 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||| | ||| |||||||| ||||| || | || || ||||| || || Sbjct 2712 GTGAAAATGTAACGGGGGCTCGCAGCATCTTTGCCCCCGGACAGGCGGGTACCAAACTGA 2771 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||| || ||||| ||||| | |||||| | ||||| |||||||||||| || || Sbjct 2772 CCACGGGGTTCCAACAGGTTAATGTTGTTTGACCCCACGTAGTTTTGAGCCAGATTCACT 2831 Query 117425 ATCGT 117429 || || Sbjct 2832 ATTGT 2836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545351101552400