Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laparus_20doris_20doris_20[genbank_20GCA_5F900068335.1_202017-04-25] 272,638 sequences; 241,555,716 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq98588 125 4e-24 seq49094 114 8e-21 seq60889 111 1e-19 seq38040 111 1e-19 seq80369 95.1 8e-15 seq22409 87.8 1e-12 >seq98588 Length=355 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||| || ||||| || ||||||||||| || || ||| Sbjct 340 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 281 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| ||||| ||||| || | |||||| || || || || Sbjct 280 AGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 221 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| | ||| ||| | ||| || || | ||||| Sbjct 220 ATGCCCTCTTTGTCTTGGAT-TTTAGCTTTTACGTTTTCAATAGTATCAGAGGGTTCCAC 162 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || |||| ||||| |||||||||||||| Sbjct 161 TTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 114 >seq49094 Length=1117 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| |||| |||||| || | ||| ||||| ||||| ||||||||||| Sbjct 683 CCCCCCCTAAGGCGCAGCACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGAC 624 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| || ||||| || | | ||||||||| || || Sbjct 623 AGCGTACGACCATCTTCTAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGA 564 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||||| ||||| | ||||| || ||| |||| Sbjct 563 ATACCTTCTTTGTCT-TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCA 506 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || |||||||| || || | || || |||||||| ||||| Sbjct 505 CTTCCAATGTAATCGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 457 >seq60889 Length=898 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||| || ||||| ||||| ||||||||||| |||||||| || Sbjct 771 CCGCCGCGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAGAT 712 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| |||||||| || ||||| || | | ||||||||| || || Sbjct 711 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGGGGA 652 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | || || |||||| ||||||| Sbjct 651 ATACCTTCTTTGTCTTGGATCTTT 628 >seq38040 Length=2861 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| | ||||| ||||| ||||| ||| || ||||||||||| || || ||| Sbjct 2465 CCTCCTCGCAAACGCAGCACCAGGTGGAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAA 2524 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||| || || ||||| || ||||| ||||| || || || Sbjct 2525 AGGGTGCGGCCGTCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 2584 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||| | ||||| | ||||||||| ||| || | Sbjct 2585 ATGCCTTCTTTGTCT-TGAATTTTAGCCTTAACATTTTCAATTGTGTCAGAAGCT-TCAA 2642 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| || || | ||||| |||||||| ||||| Sbjct 2643 CTTCTAACGTAATTGTTTTTCCTGTAAGTGTTTTAACAAAAATTTGCAT 2691 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||| || ||||| ||||| ||||||||||| |||||||| || Sbjct 2693 CCGCCGCGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAGAT 2752 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| |||||||| || ||||| || | | ||||||||| || || Sbjct 2753 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGGGGA 2812 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | || || |||||| ||||||| Sbjct 2813 ATACCTTCTTTGTCTTGGATCTTT 2836 Score = 100 bits (110), Expect = 2e-16 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||||| || || ||| ||| || ||||| || ||||| || Sbjct 1781 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCAGAC 1840 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||| ||||| |||||||| | |||||||||||| || || Sbjct 1841 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAATATGAGACGCTGTTGGTCTGGGGGG 1900 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTC 34655 | || ||||| | |||| || ||| | || || | |||||||| | | ||| Sbjct 1901 ATGCCTTCCTTATCCTGT-AT-TTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCT- 1957 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || || || || || || ||||||||||| || ||||| Sbjct 1958 -ACTTCCAGGGTAATGGTCTTTCCTGTCAATGTTTTCACAAATATTTGCAT 2007 >seq80369 Length=3501 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 ||||| | ||| || || || ||||| || || || ||||| || || |||| | || Sbjct 404 AACACAAGATGCAGTGTACTTTCCTTCTGGATATTGTAATCAGATAGCGTTCTAGCATCC 345 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || ||||| ||||| ||||| || | | ||| || || || || | |||||||||||| Sbjct 344 TCGAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCT 285 Query 34615 GTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 |||||| ||||| || || || ||| ||||||| ||||| || Sbjct 284 TCTATCTTTGCTTTTACATTCTCGATAGTATCACTAGACTCTACTTCCAATGTTATTGTC 225 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| ||||| ||||| |||||||| Sbjct 224 TTTCCTGTTAATGTTTTAACAAAGATCTGCAT 193 >seq22409 Length=1756 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||| || || || | ||| || | ||||| || |||||||| ||||| Sbjct 1473 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGCTGTTTACCAGCAAAG 1532 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGA 34634 || ||||| || ||||| || || | || ||||| ||| ||| ||| | ||||| Sbjct 1533 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCT-TGAATTTTCGCTTTTACATT 1591 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || || || | ||||| || | ||| || |||||||| || | || || || Sbjct 1592 TTCTATAGTATCAGAGGCTTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGAC 1651 Query 34695 AAAAATCTGCAT 34706 ||||| ||||| Sbjct 1652 GAAAATTTGCAT 1663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313683824156654