Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq8296 102 2e-16 seq9021 91.5 3e-13 seq10593 89.7 1e-12 seq5660 89.7 1e-12 seq4107 89.7 1e-12 >seq8296 Length=186150 Score = 102 bits (112), Expect = 2e-16 Identities = 189/274 (69%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 ||||| ||||| | || ||||| |||||| || ||| || | | ||||| ||| Sbjct 26885 GTGAAAATATAACGTGGGCTCGCTGCGTCTTTTCCTCCCGTTAGTCGTGTACCAAATTGA 26944 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 || ||| | | |||||||||||||||| || ||| ||| || || || || | Sbjct 26945 CCGATTGGCTGGAGCAAGTTAATGTTATTGCTTCCCACGAAATTTTGTGCGAGATTAATA 27004 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTG--TGTTCGGCAACATAAC 281919 ||||| || ||| || | |||||||||||||| ||||| ||||| || ||| ||| Sbjct 27005 ATTGTTGCCATAAGAGACATTTCACCGTGGTGATA--CGCTGAATGTTCAGCCACAGAAC 27062 Query 281920 CACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTT---TGAAAGCGCAATATA 281976 || ||||| || || ||||| || | | ||| |||| || ||| | |||| Sbjct 27063 CAGCTAACTGAGCAACTTTCACTTCACGTTTATCGTTACGTTTTATGCAAGTG---TATA 27119 Query 281977 ATACTTTTCGTTGAGAAGGCTTGAAACCATCAAC 282010 | ||||||| ||| ||| ||||| ||||| || Sbjct 27120 ACACTTTTCTTTGTCCAGGTTTGAAGCCATCGAC 27153 Score = 102 bits (112), Expect = 2e-16 Identities = 189/274 (69%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 ||||| ||||| | || ||||| |||||| || ||| || | | ||||| ||| Sbjct 29494 GTGAAAATATAACGTGGGCTCGCTGCGTCTTTTCCTCCCGTTAGTCGTGTACCAAATTGA 29553 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 || ||| | | |||||||||||||||| || ||| ||| || || || || | Sbjct 29554 CCGATTGGCTGGAGCAAGTTAATGTTATTGCTTCCCACGAAATTTTGTGCGAGATTAATA 29613 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTG--TGTTCGGCAACATAAC 281919 ||||| || ||| || | |||||||||||||| ||||| ||||| || ||| ||| Sbjct 29614 ATTGTTGCCATAAGAGACATTTCACCGTGGTGATA--CGCTGAATGTTCAGCCACAGAAC 29671 Query 281920 CACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTT---TGAAAGCGCAATATA 281976 || ||||| || || ||||| || | | ||| |||| || ||| | |||| Sbjct 29672 CAGCTAACTGAGCAACTTTCACTTCACGTTTATCGTTACGTTTTATGCAAGTG---TATA 29728 Query 281977 ATACTTTTCGTTGAGAAGGCTTGAAACCATCAAC 282010 | ||||||| ||| ||| ||||| ||||| || Sbjct 29729 ACACTTTTCTTTGTCCAGGTTTGAAGCCATCGAC 29762 >seq9021 Length=898580 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 63392 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 63333 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 63332 CCCCACGTTGGGC 63320 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 133143 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 133084 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 133083 CCCCACGTTGGGC 133071 >seq10593 Length=434019 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 44588 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 44647 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 44648 CCCACGTTGGGC 44659 >seq5660 Length=443010 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 98939 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 98880 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 98879 CCCACGTTGGGC 98868 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 206482 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 206541 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 206542 CCCACGTTGGGC 206553 >seq4107 Length=822756 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 253736 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 253795 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 253796 CCCACGTTGGGC 253807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057653241091370