Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11430 156 5e-33 seq6000 143 3e-29 >seq11430 Length=555723 Score = 156 bits (172), Expect = 5e-33 Identities = 239/339 (71%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 ||||||||||||| || || | ||| || ||| |||||||| || ||||||||||| | Sbjct 42899 TACCGATAGGTCTGTGCCTTTGATTGGATCTTTTTGCTTCTGGGATTGGATAATAATTGA 42958 Query 53610 TATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 53669 | || || | ||||| |||||||| || |||||| ||| |||||||| || | Sbjct 42959 TGTCGATTACGTTATTCAGGTTTCTAGTAACTACTTTAGTCACTTCCTTCAGCTTTTCGA 43018 Query 53670 AATC--AAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAAC 53727 |||| || || || | | |||| ||||| || | ||||| || |||| ||||| || Sbjct 43019 AATCGAAAGTTTTCGAGC--TTACGAACATATTGACGGCAATCGAAGCCAAGTTACATAC 43076 Query 53728 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 53787 || || |||| | | | |||||||| || || ||||| | |||||||| || || Sbjct 43077 AGCAACTTCATCCGGACTAGAATATTGTACGATTTCGGTGCACAAGTTACTACATTTTAT 43136 Query 53788 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 53847 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 43137 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 43196 Query 53848 CGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 || |||||||| | || ||| | | ||| || |||| Sbjct 43197 AGTTCCAGTTTCTACTTGTGATACGAGAATAGCAGTCCA 43235 Score = 131 bits (144), Expect = 2e-25 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 53056 CTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 53115 ||| ||||| ||| || | | |||| ||| || || || || | ||| | | ||| Sbjct 42044 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCGTCCCAGAGATCTCT 42103 Query 53116 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 53175 || |||||| ||| || | ||| ||||| || ||||| |||||||| || | ||||| Sbjct 42104 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTGGAATTCTCCGGAGAGTACTCG 42163 Query 53176 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 53235 || || || ||||| || || || || | |||||||| ||||| |||||||| || Sbjct 42164 CCTTACATATATGTTACTAGTGTAAGGCTCGATCGACTCATTGTTTCCTAAAATTTGCGC 42223 Query 53236 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 53295 ||| || || ||||||||||| || | ||||| | |||||||| || | | | | || Sbjct 42224 AGTCGAAGCTGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTAT 42283 Query 53296 TTTATCTTTTAG 53307 ||| ||||| || Sbjct 42284 TTTTTCTTTCAG 42295 >seq6000 Length=2059021 Score = 143 bits (158), Expect = 3e-29 Identities = 220/312 (71%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 ||||||||||||| || || | ||| || | | |||||||| || ||||||||||| | Sbjct 208024 TACCGATAGGTCTGTGCCTTTGATTGGATTTCTTTGCTTCTGGGATTGGATAATAATTGA 207965 Query 53610 TATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 53669 | ||||| | |||| |||||||| || |||||| ||| | ||| || || | Sbjct 207964 TGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTCTTTAGCTTTTCGA 207905 Query 53670 AATC--AAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAAC 53727 |||| || || || | | |||||||||| || | ||||| || |||| |||||| | Sbjct 207904 AATCGAAAGTTTTCGAGC--TTACAAACATATTGACGGCAATCGAAGCCAAATTACATGC 207847 Query 53728 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 53787 || || |||| | | | |||||||| || || ||||| | |||||||| || || Sbjct 207846 AGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTGCAGAAGTTACTACATTTTAT 207787 Query 53788 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 53847 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 207786 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 207727 Query 53848 CGTACCAGTTTC 53859 || |||||||| Sbjct 207726 AGTTCCAGTTTC 207715 Score = 134 bits (148), Expect = 2e-26 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 53056 CTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 53115 ||| ||||| ||| || | | |||| ||| || || || |||| ||| | | ||| Sbjct 208895 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCATCCCAGAGATCTCT 208836 Query 53116 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 53175 || |||||| ||| || | ||| ||||| || |||| || |||||| || ||||| Sbjct 208835 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTCAATTTCTCCGGAGGGTACTCG 208776 Query 53176 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 53235 || || | ||||| || || ||||| || |||||||| ||||| |||||||| || Sbjct 208775 CCTTACATATGTGTTACTAGTGTAAGGTTCGACCGACTCATTGTTTCCTAAAATTTGCGC 208716 Query 53236 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 53295 ||| || |||||||||||||| || | ||||| | |||||||| || | | | | || Sbjct 208715 AGTCGAAGCAGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTAT 208656 Query 53296 TTTATCTTTTAG 53307 ||| ||||| || Sbjct 208655 TTTTTCTTTCAG 208644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593628096269520