Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7268 104 2e-17 seq4730 95.1 1e-14 >seq7268 Length=409911 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || || | ||| | |||||| |||||||||||||| ||||||| Sbjct 286442 CCACCACGCAGACGAAGTACAAGATGAAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAA 286383 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || ||||||||||| || || | || | ||||||||||| || Sbjct 286382 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 286323 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || || || |||||| ||||| | ||| |||||| | ||| | Sbjct 286322 ATGCCCTCTTTATCCTGAATCTTTGCCTTCACATTCTCGATAGTATCGGAAGCCTCAACT 286263 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| |||||||| || | || || ||||| |||||||| Sbjct 286262 TCTAAAGTAATAGTCTTGCCAGTGAGAGTCTTCACAAAAATTTGCAT 286216 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | |||||| ||||||||||| || ||||| | || || | | || Sbjct 284603 AGTACAAGATGGAGAGTGGATTCCTTTTGAATATTGTAGTCTGAAAGCGTGCGTCCATCT 284544 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||||||||||||| | || | ||||||||| || ||| | |||||| ||||| Sbjct 284543 TCAAGCTGTTTGCCCGCAAAGATTAATCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCT 284484 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | |||||| || ||| ||||| ||||| || Sbjct 284483 TGGATTTTCGCCTTTACATTCTCAATAGTATCGGAGGCCTCAACTTCCAATGTAATAGTT 284424 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | || || ||||| |||||||| Sbjct 284423 TTACCGGTGAGAGTCTTAACAAAAATTTGCAT 284392 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || || || || | ||| | |||||| ||||||||||| |||||||| | Sbjct 282794 CCTCCTCGAAGTCTCAGTACAAGATGGAGAGTGGATTCCTTTTGAATATTATAGTCAGAA 282735 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || |||||||| || || | || | |||||||||||| ||| Sbjct 282734 AGTGTGCGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGGA 282675 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| || || ||| || | | | |||||| | ||| | Sbjct 282674 ATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGATGCCTCAACT 282615 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || || || || || | || || ||||| |||||||| Sbjct 282614 TCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAACAAAAATTTGCAT 282568 >seq4730 Length=3448589 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||||| ||| |||||||| || || |||||||| | |||||| | || ||| Sbjct 2520360 ACCAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGGAAAGGGTTCTACCATCTTCC 2520419 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | |||||| || ||| | || | || |||||| || || | |||||||| || Sbjct 2520420 AACTGTTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGAATACCTTCCTTATCTTGA 2520479 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| |||||| | | | ||||| | || ||||| ||| |||||||| Sbjct 2520480 ATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAACTTCCAGGGTGATGGTCTTT 2520539 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || | |||||||||||| || |||||| Sbjct 2520540 CCTGTAAGCGTTTTGACAAAGATCTGCATT 2520569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422194361967884