Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4277 120 3e-22 seq7268 109 6e-19 seq4730 98.7 1e-15 seq4970 96.9 4e-15 >seq4277 Length=1076248 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| |||||||| || || || ||||| |||||||||||| |||| ||||| || | Sbjct 1004212 AATGCAGATATTCGTGAAGACCCTAACGGGTAAAACCATCACCCTCGAGGTCGAGGCGTC 1004271 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | |||| || || | ||||| || || || ||| | ||||| Sbjct 1004272 TGATACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCA 1004331 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | ||| || ||||| | || || | ||||||||| ||| ||||| Sbjct 1004332 GCAACGTCTCATTTTCGCCGGAAAACAATTAGAAGATGGTCGCACCCTCTCCGATTACAA 1004391 Query 40869 CATCCAGAA 40877 |||||||| Sbjct 1004392 TATCCAGAA 1004400 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| |||||||| || || || ||||| |||||||||||| |||| ||||| || | Sbjct 1007055 AATGCAGATATTCGTGAAGACCCTAACGGGTAAAACCATCACCCTCGAGGTCGAGGCGTC 1007114 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | |||| || || | ||||| || || || ||| | ||||| Sbjct 1007115 TGATACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCA 1007174 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | ||| || ||||| | || || | ||||||||| ||| ||||| Sbjct 1007175 GCAACGTCTCATTTTCGCCGGAAAACAATTAGAAGATGGTCGCACCCTCTCCGATTACAA 1007234 Query 40869 CATCCAGAA 40877 |||||||| Sbjct 1007235 TATCCAGAA 1007243 >seq7268 Length=409911 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || ||||| || || | || || ||||| | Sbjct 283024 ATGCAAATTTTCGTTAAGACCCTTACAGGAAAAACAATAACTCTGGAGGTTGAAGCGTCA 283083 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| |||||||| |||||||| || || || | || ||| Sbjct 283084 GACACAATTGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAG 283143 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||||||||||||||| || || | ||||| || |||||||| Sbjct 283144 CAGAGGTTGATCTTCGCGGGCAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 283203 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || |||||| | || |||| || || ||||| Sbjct 283204 ATTCAAAAGGAGTCAACATTGCACCTTGTATTGCG 283238 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || ||||| || || | || || || ||| | Sbjct 284848 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACTATTACATTGGAAGTAGAGGCCTCT 284907 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| |||||||| ||||||||||| || || | |||||| Sbjct 284908 GACACAATTGAGAATGTAAAGGCAAAAATTCAAGACAAAGAGGGTATTCCTCCAGACCAG 284967 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| || |||||||| || || | ||||| || |||||||| Sbjct 284968 CAGAGGTTGATCTTCGCCGGTAAACAGCTTGAAGATGGTCGCACACTTTCTGACTACAAT 285027 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| |||| || ||||| || Sbjct 285028 ATTCAGAAGGAATCCACTCTTCATCTTGT 285056 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||| || || || | || || || || || Sbjct 286216 ATGCAAATTTTTGTGAAGACTCTCACTGGCAAGACTATTACTTTAGAAGTTGAGGCTTCC 286275 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||| |||| || |||||||||||||| | |||||| Sbjct 286276 GATACTATCGAGAATGTGAAGGCAAAGATTCAGGATAAAGAGGGCATCCCACCAGACCAG 286335 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| || ||||||||||| || | ||||| || ||||||||| Sbjct 286336 CAGAGGTTGATCTTCGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCGGACTACAAC 286395 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| |||| || ||||| || Sbjct 286396 ATTCAAAAGGAATCCACTCTTCATCTTGT 286424 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || ||||| || || | || || || ||| || Sbjct 284392 ATGCAAATTTTTGTTAAGACTCTCACCGGTAAAACTATTACATTGGAAGTTGAGGCCTCC 284451 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||||| | |||||||| ||||| ||| | || ||| Sbjct 284452 GATACTATTGAGAATGTAAAGGCGAAAATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 284511 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| |||||||||||||| || || | ||||| || |||||||| Sbjct 284512 CAGAGATTAATCTTTGCGGGCAAACAGCTTGAAGATGGACGCACGCTTTCAGACTACAAT 284571 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| |||| || ||||| || Sbjct 284572 ATTCAAAAGGAATCCACTCTCCATCTTGT 284600 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || ||||| || || | || || || ||| || Sbjct 283708 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAAACTATTACATTGGAAGTTGAGGCCTCC 283767 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||||| ||||||||||| || || | |||||| Sbjct 283768 GACACAATTGAGAATGTAAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCAGACCAG 283827 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| || || ||||| || || | ||||| || |||||||| Sbjct 283828 CAGAGGTTGATCTTCGCCGGTAAGCAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 283887 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || || || |||| || ||||| || Sbjct 283888 ATTCAAAAAGAATCCACTCTTCATCTTGT 283916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || ||||| || || | || || ||||| | Sbjct 282796 ATGCAAATTTTCGTTAAGACCCTTACAGGAAAAACAATAACTCTGGAGGTTGAAGCGTCT 282855 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||||||| |||||||| || || || | || || Sbjct 282856 GACACGATAGAGAACG-TGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCACCTGATCA 282914 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| ||||||||||| || || | || || || || ||||| Sbjct 282915 GCAGAGGTTGATCTTCGCTGGCAAACAGCTTGAAGATGGACGAACGCTTTCTGATTACAA 282974 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| ||| | || |||||||| || |||| Sbjct 282975 TATTCAGAAAGAGTCTACACTGCATCTTGTACTGCG 283010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || ||||| || || | || || || || || Sbjct 283252 ATGCAAATTTTTGTTAAGACCCTTACAGGTAAAACAATAACGCTGGAAGTTGAGGCATCC 283311 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||| | ||||||| |||||||| || || ||| | ||||| Sbjct 283312 GATACTATAGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAA 283371 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||||||||| || || | || || || |||||||| Sbjct 283372 CAGAGGTTGATCTTCGCAGGCAAACAGCTCGAAGATGGCCGTACACTTTCTGACTACAAT 283431 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || |||||| | || |||| || || ||||| Sbjct 283432 ATTCAAAAGGAGTCTACATTGCACCTTGTATTGCG 283466 >seq4730 Length=3448589 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| |||||||| |||||||||||| | || || || || | Sbjct 2521480 ATGCAGATCTTTGTAAAAACACTCACGGGTAAAACCATCACCCTGGAAGTTGAGGCTTCG 2521421 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | || | || || | || || || || || || | || || Sbjct 2521420 GACACGATAGAAAACG-TGAAAGCTAAGATACAAGATAAGGAAGGAATACCTCCCGAACA 2521362 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| || || |||||| | || |||| || || || |||||||| Sbjct 2521361 ACAACGTTTAATCTTTGCTGGTAAACAGTTAGAAGACGGACGAACTCTATCAGACTACAA 2521302 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || || | || ||||| Sbjct 2521301 CATCCAGAAGGAATCCACCCTCCACTTGGTTTTGCG 2521266 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| ||||| || || ||||||||| | || || ||||| | Sbjct 2521253 AATGCAGATCTTCGTGAAAACACTCACTGGAAAGACCATCACCCTGGAAGTTGAAGCTTC 2521194 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | || | || |||| || || || || || || | || || Sbjct 2521193 AGATACGATAGAGAATGTAAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 2521134 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || |||||| |||| || | | || || |||||| || Sbjct 2521133 GCAGCGTTTGATCTTCGCTGGAAAACAGTTGGAAGATGGTAGAACACTTTCCGACTATAA 2521074 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 2521073 CATCCAGAAGGAGTCCACTCTTCA 2521050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || || ||||||||| | || || ||||| | Sbjct 2520797 AATGCAAATCTTCGTGAAAACACTCACAGGAAAGACCATCACCTTGGAGGTTGAAGCTTC 2520738 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | |||| | || | || |||| || || || || || || | || | Sbjct 2520737 AGATACGATAGAGAACG-TAAAAGCCAAGATTCAAGATAAGGAAGGAATTCCTCCAGATC 2520679 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || || ||||| | || || | | || || |||||| | Sbjct 2520678 AGCAGCGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACTCTTTCCGACTATA 2520619 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| |||| || || | || ||||| Sbjct 2520618 ACATCCAGAAGGAGTCCACTCTTCACTTGGTCTTGCG 2520582 >seq4970 Length=98340 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 |||||||| |||||| | || || ||||| || || || || |||||||||||| Sbjct 66232 CATTTCATATCTCACGTGTTAGCATTCTTCGCTGCTTCTGATGGAATTGTCAACGAGAAT 66173 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTT 116860 || || || | ||| ||| ||||| || || | ||||| || ||||| || || || Sbjct 66172 CTTGTAGAAAGGTTCAGTCAAGAGGTCCAAGTTACAGAGGCACGCTGCTTTTATGGTTTC 66113 Query 116861 CAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTC 116898 ||| | || ||||| || || ||||| ||||||||||| Sbjct 66112 CAGGTTGCTATGGAAAATGTCCACTCAGAAATGTATTC 66075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 ||| || ||||| ||||| | |||||||||| |||| || | ||||| || Sbjct 65966 TTTATTTAACGCAATCGAAAATCTGCCGTGCGTTGCTAAGAAAGCTAACTGGGCATTGAA 65907 Query 117004 CTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062 ||||| | | ||| ||| | ||| ||| || | || || || || || || | Sbjct 65906 TTGGATAAACCAC-GAGTCTGCCACTTTCCCCGAACGAATAGTCGCATTTGCTGCGGTGG 65848 Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122 | ||| | || || || ||||||||||| || |||||| | |||||| | || |||| Sbjct 65847 AAGGCATATTTTTCAGCGGTAGTTTCGCCGCTATCTTTTGGTTGAAGAAAAGAGGTCTCA 65788 Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| ||||| || || |||||||| ||||| || || || |||| Sbjct 65787 TGCCTGGCCTTACATTTAGCAACGAACTCATTTCTAGAGATGAGG 65743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515138059416240