Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10632 109 6e-19 seq11430 107 2e-18 seq7560 107 2e-18 seq4057 107 2e-18 seq12157 105 8e-18 seq5743 96.9 4e-15 seq7268 95.1 1e-14 seq10593 93.3 5e-14 seq7652 93.3 5e-14 seq7153 93.3 5e-14 seq6576 89.7 6e-13 seq4730 82.4 9e-11 >seq10632 Length=331853 Score = 109 bits (120), Expect = 6e-19 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60057 AAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 249248 AAAAATAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 249189 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||||||||||| Sbjct 249188 ACTGACCACTATACTACCGAGGAT 249165 >seq11430 Length=555723 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 390917 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 390858 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 390857 TACTACCGAGGATT 390844 >seq7560 Length=151759 Score = 107 bits (118), Expect = 2e-18 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60050 GTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 ||||| ||| | | |||| |||| ||||||||||||| |||||||||||||||||||| Sbjct 101970 GTTTAAAAAATAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 101911 Query 60110 GACATACTCACCACTATACTACCGAGGAT 60138 | ||||| |||||||||||||||||||| Sbjct 101910 GGGATACTGACCACTATACTACCGAGGAT 101882 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 99954 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 99895 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 99894 CTATACTATCGAGGA 99880 >seq4057 Length=754470 Score = 107 bits (118), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 60051 TTTATGAAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGC 60108 |||| |||||| | |||| |||| ||||||||||||| ||||||||||||||||||| Sbjct 586161 TTTAGCAAAAATAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGC 586220 Query 60109 GGACATACTCACCACTATACTACCGAGGATT 60139 || ||||| ||||||||||||||||||||| Sbjct 586221 GGGGATACTGACCACTATACTACCGAGGATT 586251 Score = 107 bits (118), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 60051 TTTATGAAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGC 60108 |||| |||||| | |||| |||| ||||||||||||| ||||||||||||||||||| Sbjct 590806 TTTAGCAAAAATAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGC 590747 Query 60109 GGACATACTCACCACTATACTACCGAGGATT 60139 || ||||| ||||||||||||||||||||| Sbjct 590746 GGGGATACTGACCACTATACTACCGAGGATT 590716 >seq12157 Length=907674 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 250030 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 250089 Query 60124 TATACTACCGAGGATTGA 60141 ||||||| ||||||| || Sbjct 250090 TATACTATCGAGGATAGA 250107 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 251134 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 251193 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 251194 CTATACTATCGAGGA 251208 >seq5743 Length=292356 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 83337 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 83396 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 83397 TACTATCGAGGAT 83409 >seq7268 Length=409911 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | ||||||||| ||||||||||||||| ||||| | ||||| || | Sbjct 286202 CGCAATACAAGATGCAATGTAGACTCCTTTTGAATATTATAATCTGAAAGAGTGCGGCCA 286143 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| ||||| ||||| || | ||||||||||| | || | ||||| || Sbjct 286142 TCTTCAAGCTGTTTACCGGCGAAGATCAACCGCTGCTGGTCTGGTGGGATTCTCTCTTTA 286083 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||| | || || || | || || Sbjct 286082 TCCTGGATCTTCGCCTTCACATTCTCAATAGTGTCAGAGGCCTCTACTTCCAATGTAATA 286023 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || ||||| || || |||||||| Sbjct 286022 GTTTTACCAGTCAGAGTCTTAACGAAAATTTGCAT 285988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | ||| | ||| || |||||||||||||| |||| || || || | Sbjct 286886 CGCAATACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCA 286827 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| ||||| ||||| || | || |||||| || | || | | || ||| Sbjct 286826 TCTTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATACCTTCTTTG 286767 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| |||| | |||| || | | || ||| | ||| || || | ||| || Sbjct 286766 T-CTTGAATTTTAGCCTTGACATTCTCAATAGTATCGGAGGCTTCAACTTCCAGCGTTAT 286708 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| ||||| || ||||||||||| |||||||| Sbjct 286707 TGTTTTCCCCGTGAGGGTCTTTACAAAAATTTGCAT 286672 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || |||||| || | |||||||| |||||||||||||||||| |||| Sbjct 283478 CCTCCACGTAGACGCAATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAGAA 283419 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||| || || ||||| || | | ||| ||||| | || Sbjct 283418 AGTGTACGGCCATCTTCGAGCTGTTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGGGGA 283359 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||| | ||| |||| | ||||| | | | || ||| | || || Sbjct 283358 ATACCTTCTTTGT-CTTGAATTTTAGCTTTGACATTTTCTATAGTATCGGATGCCTCAAC 283300 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||| || ||||| || || || ||||| ||||| |||||||| Sbjct 283299 TTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAACAAAAATTTGCAT 283252 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | |||| || | ||||| ||| ||| || |||||||||||||||| Sbjct 283022 CCTCCTCGAAGCCGCAGTACAAGATGCAGTGTAGACTCTTTCTGAATATTGTAATCAGAA 282963 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||| || |||||||| || | | |||||| || | || Sbjct 282962 AGCGTTCGTCCATCTTCAAGCTGTTTGCCAGCGAAGATCAACCTCTGCTGATCAGGTGGA 282903 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||| | ||| |||| | || | || | | |||||| || ||| || Sbjct 282902 ATACCTTCTTTGT-CTTGAATTTTCGCCTTCACGTTCTCTATCGTGTCAGACGCTTCAAC 282844 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || ||||| || || || ||||| || || |||||||| Sbjct 282843 CTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTAACGAAAATTTGCAT 282796 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||| || | |||||||| |||||||||||||||||| |||| Sbjct 283250 CCTCCACGAAGACGCAATACAAGGTGCAATGTTGACTCCTTTTGAATATTGTAGTCAGAA 283191 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||| || || ||||| || | | |||||| || | || Sbjct 283190 AGTGTGCGGCCATCTTCGAGCTGTTTGCCCGCGAAGATCAACCTCTGCTGATCTGGTGGA 283131 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||| | ||| |||||| || | | | | ||||| || ||| || Sbjct 283130 ATACCTTCTTTGT-CTTGAATTTTTGCCTTAACATTTTCAATTGTGTCTGACGCTTCAAC 283072 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || ||||| || || || ||||| || || |||||||| Sbjct 283071 CTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTAACGAAAATTTGCAT 283024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||||| ||| |||||||||||||||||| |||| || || || | || || ||||| Sbjct 285735 ATGCAGTGTAGACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCAAGCTG 285676 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||||||||| || | | ||||||||| | || | | ||| || ||| ||| | | Sbjct 285675 TTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGTATTCCCTCTTTATCC-TGAATCT 285617 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 ||| || | || | | ||||| | || || || | || || ||||| || | Sbjct 285616 TTGCCTTCACATTCTCAATAGTGTCAGAGGCCTCTACTTCCAATGTAATAGTTTTACCAG 285557 Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || || |||||||| Sbjct 285556 TCAGGGTCTTAACGAAAATTTGCAT 285532 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||| || |||| || || || | || || ||||| ||||||||||| Sbjct 282758 TCCTTTTGAATATTATAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCGAAG 282699 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | | ||||||||| | || | | || |||| | ||| |||| | ||||| | Sbjct 282698 ATCAACCTCTGCTGGTCCGGGGGAATACCTTCTTTGT-CTTGAATTTTAGCTTTGACATT 282640 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || ||| | || || || | ||| || ||||| || || || ||||| || Sbjct 282639 TTCAATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAAC 282580 Query 43172 AAAGATTTGCAT 43183 ||| |||||||| Sbjct 282579 AAAAATTTGCAT 282568 >seq10593 Length=434019 Score = 93.3 bits (102), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 60058 AAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 416413 AAAATTTGGGTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 416472 Query 60117 TCACCACT----ATACTACCGAGGAT 60138 | |||||| |||||||||||||| Sbjct 416473 TGACCACTATACATACTACCGAGGAT 416498 >seq7652 Length=136160 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| || |||||| || | |||| |||||||| ||||||||||||||||||||| |||| Sbjct 84829 AAAGATATTCTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 84888 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||| |||||||| |||||| Sbjct 84889 TGACCGCTATACTATCGAGGA 84909 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 || |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| | Sbjct 81085 AACTTTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGA 81144 Query 60120 CCACT 60124 ||||| Sbjct 81145 CCACT 81149 >seq7153 Length=494819 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||| || |||||| || | |||| |||||||| ||||||||||||||||||||| | Sbjct 433258 ATAAAAGATATTCTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 433317 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||| |||||||| |||||| Sbjct 433318 TACTGACCGCTATACTATCGAGGA 433341 >seq6576 Length=527167 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||| |||||||| ||||||||||||||||||||| ||||| ||| | Sbjct 215445 TTCTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCGC 215504 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 215505 TATACTATCGAGGA 215518 >seq4730 Length=3448589 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | |||||| ||||| || | ||| ||||| || || ||||| || | Sbjct 2521253 TCCTCCGCGAAGACGCAAAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGA 2521312 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || |||| |||| ||| |||||||| || || | || || || |||| || Sbjct 2521313 TAGAGTTCGTCCGTCTTCTAACTGTTTACCAGCAAAGATTAAACGTTGTTGTTCGGGAGG 2521372 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| || || || ||| | | | | |||||| | || || Sbjct 2521373 TATTCCTTCCTTATCTTGTATCTTAGCTTTCACGTTTTCTATCGTGTCCGAAGCCTCAAC 2521432 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| ||||| || || ||||||||||| ||||| Sbjct 2521433 TTCCAGGGTGATGGTTTTACCCGTGAGTGTTTTTACAAAGATCTGCAT 2521480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571727545875720