Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4730 134 2e-26 seq5064 125 1e-23 seq7268 87.8 3e-12 >seq4730 Length=3448589 Score = 134 bits (148), Expect = 2e-26 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||||| || |||||||| | |||||| || || ||||||||| || | Sbjct 2520796 TTCCTCCGCGAAGTCGCAAGACCAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGG 2520855 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| ||||||||||| |||||||| ||||| | |||||||| || | Sbjct 2520856 AAAGAGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATCAAACGCTGCTGATCTGGTG 2520915 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||||||||| |||||||| ||||||||| ||| | Sbjct 2520916 GAATTCCTTCCTTATCTTGAATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAA 2520975 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| || || ||||| | ||||| | || || |||||| Sbjct 2520976 CTTCCAGGGTGATGGTCTTCCCTGTCAGAGTTTTGACAAAGATCTGCATT 2521025 Score = 125 bits (138), Expect = 1e-23 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||| | || ||||| || | ||| || || || ||||||||| || | Sbjct 2520112 TTCCTCCGCGAAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGTATATTATAGTCGG 2520171 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| ||||| | || ||||||||||| |||||||| ||||| | |||||||| |||| Sbjct 2520172 AAAGTGTTCTTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGCTGCTGATCTGGAG 2520231 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||||||||| |||||||| ||||||||| ||| | Sbjct 2520232 GAATTCCTTCCTTATCTTGAATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAA 2520291 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 | || || ||||| || || ||||| | |||||| | ||| ||||||||| Sbjct 2520292 CCTCCAGGGTGATGGTCTTTCCTGTGAGTGTTTTCACGAAGATTTGCATT 2520341 Score = 122 bits (134), Expect = 1e-22 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||| | || ||||| || | ||| || || || || ||||| || | Sbjct 2520568 TTCCTCCGCGAAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCGG 2520627 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| ||||||||||| |||||||| ||||| | |||||||| |||| Sbjct 2520628 AAAGAGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATCAAACGCTGCTGATCTGGAG 2520687 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||||||||| |||||||| ||||||||| ||| | Sbjct 2520688 GAATTCCTTCCTTATCTTGAATCTTGGCTTTTACGTTCTCTATCGTATCTGAAGCTTCAA 2520747 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 | || | ||||| || || ||||| | |||||| | ||| ||||||||| Sbjct 2520748 CCTCCAAGGTGATGGTCTTTCCTGTGAGTGTTTTCACGAAGATTTGCATT 2520797 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| || | || ||||| || || || || || ||||| ||||| | || Sbjct 2519901 AAGACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCGTCT 2519960 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 ||||||||||| |||||||| ||||| | ||||||||| |||||||||||||| |||||| Sbjct 2519961 TCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 2520020 Query 146186 TG 146187 || Sbjct 2520021 TG 2520022 Score = 104 bits (114), Expect = 3e-17 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||| || || || || ||||| || ||||| ||||| | ||| || Sbjct 2521044 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCGGAAAGTGTTCTACCATCTTCC 2521103 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 || ||||||||||| || ||||| | |||||||| |||||||||||||| |||||||| Sbjct 2521104 AACTGTTTTCCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 2521163 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||||||||| ||| ||||| || ||||| || || Sbjct 2521164 ATCTTAGCTTTTACATTCTCTATCGTATCTGAAGCTTCAACTTCCAGGGTGATGGTCTTT 2521223 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || | |||||| | ||| || |||||| Sbjct 2521224 CCAGTGAGTGTTTTCACGAAGATCTGCATT 2521253 >seq5064 Length=110883 Score = 125 bits (138), Expect = 1e-23 Identities = 104/127 (82%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||| || || | || ||||||||||||||||||||||| ||||| |||||||| Sbjct 108513 TCCACCCCTTAGACGCAAGACCAAATGTAAAGTAGATTCTTTTTGGATATTGTAATCTGA 108572 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||| | ||| || | ||||| |||||||| |||||||||||||||||||| || Sbjct 108573 GAGGGTTCTACCATCTTCAAGCTGTTTACCAGCAAATATCAATCTTTGCTGATCCGGTGG 108632 Query 146170 AATTCCT 146176 ||| ||| Sbjct 108633 AATACCT 108639 >seq7268 Length=409911 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | ||||| | || || ||||| || ||| || ||||| || || || Sbjct 284162 CCACCACGAAGACGCAATACAAGGTGCAATGTAGACTCCTTTTGA-ATATTGTAGTCAGA 284104 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | || ||| || | ||||| || ||||| || ||||||||||| ||||| Sbjct 284103 AAGTGTGCGGCCATCTTCAAGCTGTTTACCGGCAAAGATTAATCTTTGCTGCATTGGAGG 284044 Query 146170 AATTCCTTCTTTATCTT 146186 ||| ||||||||||||| Sbjct 284043 AATACCTTCTTTATCTT 284027 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||||| | ||| || ||||| || ||| || |||||||||||||||||||| | || ||| Sbjct 286199 AATACAAGATGCAATGTAGACTCCTTTTGA-ATATTATAATCTGAAAGAGTGCGGCCATC 286141 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || | ||||| || || || ||||| | ||||| || || || |||| |||||||| Sbjct 286140 TTCAAGCTGTTTACCGGCGAAGATCAACCGCTGCTGGTCTGGTGGGATTCTCTCTTTATC 286081 Query 146185 TTG 146187 || Sbjct 286080 CTG 286078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743409303886080