Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4730 100 2e-16 seq7268 86.0 4e-12 seq4277 86.0 4e-12 >seq4730 Length=3448589 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | ||| |||| ||| | ||| || ||||| ||||| |||||||| Sbjct 2521025 TCCTCCGCGAAGACGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCGGA 2521084 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | || |||||||| || || ||||| || | |||||||| || || Sbjct 2521085 AAGTGTTCTACCATCTTCCAACTGTTTTCCAGCGAAGATCAAACGCTGCTGATCTGGAGG 2521144 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||||| |||| || |||||| ||| | | ||| || Sbjct 2521145 AATTCCTTCCTTATCTTGAATCTTAGCTTTTACATTCTCTATCGTATCTGAAGCTTCAAC 2521204 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || ||||| |||||||| ||||||||||| Sbjct 2521205 TTCCAGGGTGATGGTCTTTCCAGTGAGTGTTTTCACGAAGATCTGCAT 2521252 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || |||| || | |||| || |||||||| || |||||||| Sbjct 2520341 TCCACCGCGAAGTCGCAAGACCAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGGA 2520400 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | || |||||||| || || || || || | |||||||| ||| || Sbjct 2520401 AAGGGTTCTACCATCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGG 2520460 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||| || ||||| ||||| | | |||||| ||| | | ||| | Sbjct 2520461 AATACCTTCCTTATCTTGAATCTTG-GCTTTCACGTTCTCTATCGTATCTGAAGCTTCAA 2520519 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| || || || || ||||| |||||||||||||| Sbjct 2520520 CTTCCAGGGTGATGGTCTTTCCTGTAAGCGTTTTGACAAAGATCTGCAT 2520568 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || |||| ||| | || ||| ||||| ||||||||||| || Sbjct 2521253 TCCTCCGCGAAGACGCAAAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGA 2521312 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || ||||| || || || || || | || || || ||| || Sbjct 2521313 TAGAGTTCGTCCGTCTTCTAACTGTTTACCAGCAAAGATTAAACGTTGTTGTTCGGGAGG 2521372 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||| || |||||| ||||| | | |||||| || | | || | Sbjct 2521373 TATTCCTTCCTTATCTTGTATCTTA-GCTTTCACGTTTTCTATCGTGTCCGAAGCCTCAA 2521431 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||||||||| || ||||| ||||| |||||||||||||| Sbjct 2521432 CTTCCAGGGTGATGGTTTTACCCGTGAGTGTTTTTACAAAGATCTGCAT 2521480 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || |||| ||| | || ||| || || ||||||||||| || Sbjct 2519885 TCCCCCGCGTAGACGCAAGACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGA 2519944 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | |||| || || || || || || || || | || ||||| || || Sbjct 2519945 AAGGGTTCTTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGG 2520004 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||||| ||||| || |||||| ||| | | ||| || Sbjct 2520005 AATTCCTTCCTTATCTTGAATCTTGGCCTTTACATTCTCTATCGTATCTGAAGCTTCAAC 2520064 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || |||||||| |||||||||||||| Sbjct 2520065 CTCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACAAAGATCTGCAT 2520112 >seq7268 Length=409911 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || || || | ||| ||| || || ||||||||||| || Sbjct 286442 CCACCACGCAGACGAAGTACAAGATGAAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAA 286383 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||| || || ||||| || | || ||||||||| || Sbjct 286382 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 286323 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| || || |||||| ||| | || | || | ||||| | || || Sbjct 286322 ATGCCCTCTTTATCCTGAATCTTTGCCTTCACATTCTCGATAGTATCGGAAGCCTCAACT 286263 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||| |||||||| |||||||| || ||||| Sbjct 286262 TCTAAAGTAATAGTCTTGCCAGTGAGAGTCTTCACAAAAATTTGCAT 286216 >seq4277 Length=1076248 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| || ||||| ||||| || || | || || || || || || ||||||| Sbjct 1004402 CTTTCTGGATATTGTAATCGGAGAGGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAAA 1004343 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319 |||| || |||||||| ||| | | |||||||| ||||| ||| | || Sbjct 1004342 TGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTT 1004283 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 | || | ||| | || ||||| || | ||||||||||| || || || || ||||| | Sbjct 1004282 CGATGGTATCAGACGCCTCGACCTCGAGGGTGATGGTTTTACCCGTTAGGGTCTTCACGA 1004223 Query 34380 AGATCTGCAT 34389 | |||||||| Sbjct 1004222 ATATCTGCAT 1004213 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| || ||||| ||||| || || | || || || || || || ||||||| Sbjct 1007245 CTTTCTGGATATTGTAATCGGAGAGGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAAA 1007186 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319 |||| || |||||||| ||| | | |||||||| ||||| ||| | || Sbjct 1007185 TGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTT 1007126 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 | || | ||| | || ||||| || | ||||||||||| || || || || ||||| | Sbjct 1007125 CGATGGTATCAGACGCCTCGACCTCGAGGGTGATGGTTTTACCCGTTAGGGTCTTCACGA 1007066 Query 34380 AGATCTGCAT 34389 | |||||||| Sbjct 1007065 ATATCTGCAT 1007056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323022392193440