Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7268 113 4e-20 >seq7268 Length=409911 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| |||||||| ||| |||| | || || || ||||| |||||||| Sbjct 285038 TCCTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGCTGTTTACCGGCGAAG 284979 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| ||| ||||| ||||| | |||||| ||||| ||||||| ||| || | Sbjct 284978 ATCAACCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGAATTTTTGCCTTTACATTC 284919 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| |||| || |||| ||||| || || || || || || || ||| Sbjct 284918 TCAATTGTGTCAGAGGCCTCTACTTCCAATGTAATAGTTTTTCCAGTAAGTGTTTTAACA 284859 Query 45326 AAGATTTGCATG 45337 || ||||||||| Sbjct 284858 AAAATTTGCATG 284847 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| |||||||||||||| ||| ||| | || ||||| ||||| || ||||| Sbjct 286406 TCCTTTTGAATGTTGTAGTCCGAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCGAAG 286347 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| ||| ||||| || || | ||||| || ||| ||| ||| ||| || | Sbjct 286346 ATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCCTGAATCTTTGCCTTCACATTC 286287 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | || | |||| || || | ||||| |||||||| || |||||||||||| Sbjct 286286 TCGATAGTATCGGAAGCCTCAACTTCTAAAGTAATAGTCTTGCCAGTGAGAGTCTTCACA 286227 Query 45326 AAGATTTGCATG 45337 || ||||||||| Sbjct 286226 AAAATTTGCATG 286215 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| || |||||| ||||| |||||||| ||| ||| | || || | Sbjct 282319 CAAGATGCAGTGTAGACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGTCCATCTTCAA 282260 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | |||||||||||||| ||||||| ||| || || || || | ||| || ||||| || Sbjct 282259 GCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGAA 282200 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 ||||| |||||| | | |||| | || ||||| | ||| || || || | Sbjct 282199 TTTTTGCCTTAACATTTTCAATTGTGTCTGATGCTTCAACCTCTAAGGTTATTGTTTTTC 282140 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | |||| ||||| || ||||| ||||| || Sbjct 282139 CAGTCAATGTCTTAACGAAGATCTGCATATT 282109 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| |||||||| ||| |||| | || || || ||||| |||||||| Sbjct 285494 TCCTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGCTGTTTACCGGCGAAG 285435 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || |||| || ||| ||||| | ||| ||||| || ||||| ||| || | Sbjct 285434 ATTAACCTTTGCTGGATTGGAGGGATACCTTCCTTATCTTGGATTTTCGCCTTTACGTTC 285375 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| |||| || || | ||||| ||||| || || |||||||| ||| Sbjct 285374 TCAATTGTGTCGGAGGCCTCAACTTCTAAAGTAATAGTCTTTCCAGTAAGAGTCTTAACA 285315 Query 45326 AAGATTTGCAT 45336 || |||||||| Sbjct 285314 AAAATTTGCAT 285304 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| ||||||||| ||| | | | || || || || || |||||||| Sbjct 283670 TCCTTCTGAATATTGTAGTCGGAAAGTGTGTGGCCATCTTCAAGCTGCTTCCCGGCGAAG 283611 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| | |||||| || || || | ||||| || ||| ||||||| ||| || | Sbjct 283610 ATCAATCTCTGTTGTTCTGGTGGGATTCCCTCTTTATCCTGAATTTTTGACTTGACGTTC 283551 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | || |||| || |||| || || || || || || || ||||| ||| Sbjct 283550 TCAATTGTATCAGAGGCCTCTACTTCCAACGTTATGGTTTTTCCGGTAAGGGTCTTAACA 283491 Query 45326 AAGATTTGCATG 45337 || ||||||||| Sbjct 283490 AAAATTTGCATG 283479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395014536079579