Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7268 89.7 4e-13 >seq7268 Length=409911 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||||| | || ||||| ||||| || ||||| |||||||||| Sbjct 283706 CCTCCGCGAAGACGTAGTACAAGATGCAGTGTAGATTCCTTCTGAATATTGTAGTCGGAA 283647 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||| | || || || || |||| | ||| ||||| || || Sbjct 283646 AGTGTGTGGCCATCTTCAAGCTGCTTCCCGGCGAAGATCAATCTCTGTTGTTCTGGTGGG 283587 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || || ||||| ||||| | |||||| | ||| || ||| || ||| | Sbjct 283586 ATTCCCTCTTTATCCTGAATTTTTGACTTGACGTTCTCAATTGTATCAGAGGCCTCTACT 283527 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| |||| ||||| | || || |||||||||||||| Sbjct 283526 TCCAACGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATTTGCAT 283480 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||| | || || || ||||| |||||||| |||||||| | Sbjct 284618 CCACCACGGAGGCGAAGTACAAGATGGAGAGTGGATTCCTTTTGAATATTGTAGTCTGAA 284559 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | |||||||||||| |||| | ||| || ||||| ||| Sbjct 284558 AGCGTGCGTCCATCTTCAAGCTGTTTGCCCGCAAAGATTAATCTCTGCTGATCTGGGGGA 284499 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || |||| ||| || | ||| ||| || || ||| | Sbjct 284498 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACATTCTCAATAGTATCGGAGGCCTCAACT 284439 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || |||| ||||| | || || |||||||||||||| Sbjct 284438 TCCAATGTAATAGTTTTACCGGTGAGAGTCTTAACAAAAATTTGCAT 284392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379285751610255