Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11430 141 1e-28 seq6000 129 7e-25 >seq11430 Length=555723 Score = 141 bits (156), Expect = 1e-28 Identities = 236/339 (70%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 ||||||||||||| || || | ||| || ||| |||||||| || ||||||||||| | Sbjct 42899 TACCGATAGGTCTGTGCCTTTGATTGGATCTTTTTGCTTCTGGGATTGGATAATAATTGA 42958 Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 | || || | ||||| || ||||| || |||||| ||| |||||||| || | Sbjct 42959 TGTCGATTACGTTATTCAGGTTTCTAGTAACTACTTTAGTCACTTCCTTCAGCTTTTCGA 43018 Query 62908 AATC--AAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACAC 62965 |||| || | | | | |||| ||||| || | |||| || |||| ||||| || Sbjct 43019 AATCGAAAGTTTTCGAGC--TTACGAACATATTGACGGCAATCGAAGCCAAGTTACATAC 43076 Query 62966 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 63025 || || |||| | | | |||||||| || || ||||| | |||||||| || || Sbjct 43077 AGCAACTTCATCCGGACTAGAATATTGTACGATTTCGGTGCACAAGTTACTACATTTTAT 43136 Query 63026 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63085 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 43137 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 43196 Query 63086 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 ||| |||||||| | || ||| | | ||| || |||| Sbjct 43197 AGTTCCAGTTTCTACTTGTGATACGAGAATAGCAGTCCA 43235 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 62324 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTT 62383 ||| || || || || | ||| | | ||| || |||||| ||| || | ||| || || Sbjct 42074 ATTTTTCATATCTTCGTCCCAGAGATCTCTTTCAGTTAAATCTCGTAGCAAATGAGGATT 42133 Query 62384 AACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62443 || |||||||||||||| || | ||||| || || || ||||| || || || || Sbjct 42134 CACGACTTGGAATTCTCCGGAGAGTACTCGCCTTACATATATGTTACTAGTGTAAGGCTC 42193 Query 62444 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62503 | ||||||||| ||||| |||||||| ||||| || || ||||||||||| || | ||| Sbjct 42194 GATCGACTCATTGTTTCCTAAAATTTGCGCAGTCGAAGCTGTCGGCATAGGCGCGATCAA 42253 Query 62504 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG 62545 || | |||||||| || | | | | ||||| ||||| || Sbjct 42254 TAGAGAATTTCTAACTCCATGTTTCTTTATTTTTTCTTTCAG 42295 >seq6000 Length=2059021 Score = 129 bits (142), Expect = 7e-25 Identities = 217/312 (70%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 ||||||||||||| || || | ||| || | | |||||||| || ||||||||||| | Sbjct 208024 TACCGATAGGTCTGTGCCTTTGATTGGATTTCTTTGCTTCTGGGATTGGATAATAATTGA 207965 Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 | ||||| | |||| || ||||| || |||||| ||| | ||| || || | Sbjct 207964 TGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTCTTTAGCTTTTCGA 207905 Query 62908 AATC--AAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACAC 62965 |||| || | | | | |||||||||| || | |||| || |||| |||||| | Sbjct 207904 AATCGAAAGTTTTCGAGC--TTACAAACATATTGACGGCAATCGAAGCCAAATTACATGC 207847 Query 62966 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 63025 || || |||| | | | |||||||| || || ||||| | |||||||| || || Sbjct 207846 AGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTGCAGAAGTTACTACATTTTAT 207787 Query 63026 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63085 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 207786 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 207727 Query 63086 AGTACCAGTTTC 63097 ||| |||||||| Sbjct 207726 AGTTCCAGTTTC 207715 Score = 125 bits (138), Expect = 9e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 62324 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTT 62383 ||| || || || |||| ||| | | ||| || |||||| ||| || | ||| || || Sbjct 208865 ATTTTTCATATCTTCATCCCAGAGATCTCTTTCAGTTAAATCTCGTAGCAAATGAGGATT 208806 Query 62384 AACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62443 || |||| | |||||| || ||||| || || | ||||| || || ||||| Sbjct 208805 CACGACTTCAATTTCTCCGGAGGGTACTCGCCTTACATATGTGTTACTAGTGTAAGGTTC 208746 Query 62444 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62503 ||||||||||| ||||| |||||||| ||||| || |||||||||||||| || | ||| Sbjct 208745 GACCGACTCATTGTTTCCTAAAATTTGCGCAGTCGAAGCAGTCGGCATAGGCGCGATCAA 208686 Query 62504 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG 62545 || | |||||||| || | | | | ||||| ||||| || Sbjct 208685 TAGAGAATTTCTAACTCCATGTTTCTTTATTTTTTCTTTCAG 208644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629718411600720