Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11430 122 8e-23 seq6000 116 3e-21 seq4970 96.9 3e-15 >seq11430 Length=555723 Score = 122 bits (134), Expect = 8e-23 Identities = 214/310 (69%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 37045 TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTA 37104 || ||||||||||||| | | || | ||| || || || | | ||| | || ||| Sbjct 42045 TGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCGTCCCAGAGATCTCTT 42104 Query 37105 CTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTT 37164 ||| |||| | | || ||||| || || || || ||||| || | ||||| Sbjct 42105 TCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTGGAATTCTCCGGAGAGTACTCGC 42164 Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 ||| |||||| || ||||| || || || || |||||||| || | ||| ||||| | Sbjct 42165 CTTACATATATGTTACTAGTGTAAGGCTCGATCGACTCATTGTTTCCTAAAATTTGCGCA 42224 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATT 37284 || || || || ||||| || || || | || |||||| | ||||||| | || ||| Sbjct 42225 GTCGAAGCTGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTATT 42284 Query 37285 CTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCAT 37342 | | ||| || || |||||||||| || || || || | | || ||||||||||| Sbjct 42285 TTTTCTTTCAGCGCACTCCAATCCCACAAGTCAGTCGGAGTAACGTT--CCACATATCAT 42342 Query 37343 ATTGTAGAAT 37352 ||||||| || Sbjct 42343 ATTGTAGGAT 42352 Score = 102 bits (112), Expect = 8e-17 Identities = 240/359 (67%), Gaps = 10/359 (3%) Strand=Plus/Plus Query 37538 TACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGA 37597 |||| || ||||| || | | ||| ||||| | |||| | |||||||||||||| Sbjct 42899 TACCGATAGGTCTGTGCCTTTGATTGGATCTTTTTGCTTCTGGGATTGGATAATAATTGA 42958 Query 37598 TATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGA 37657 | || |||| ||||| || ||| || | || ||| || | | ||| ||| |||| Sbjct 42959 TGTCGATTACGTTATTCAGGTTTCTAGTAACTACTTTAGTCACTTCCTTCAGCTTTTCGA 43018 Query 37658 ACAT--AAA---TACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACA 37712 | || ||| | || ||| |||| ||| || | ||| || | | ||||| Sbjct 43019 A-ATCGAAAGTTTTCGAGCTTACGAACATATTGACG----GCAATCGAAGCCAAGTTACA 43073 Query 37713 TACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCT 37772 ||||||||||||||| || | |||||| || || || || | ||||| || | Sbjct 43074 TACAGCAACTTCATCCGGACTAGAATATTGTACGATTTCGGTGCACAAGTTACTACATTT 43133 Query 37773 AATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATA 37832 |||||||| | ||| ||||| ||||| ||||||| ||||||||| | || || Sbjct 43134 TATTGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTA 43193 Query 37833 CGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA 37891 || ||||| ||||| ||| | ||| ||||| ||||||| ||| |||| || Sbjct 43194 AGGAGTTCCAGTTTCTACTTGTGATACGAGAATAGCAGTCCATAATTCTCTGGCTTGAA 43252 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 38092 TTCTTTCTTAAGCTTAGAAAA-TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 |||||| || || || |||| || || ||||| || ||||||||||||| || || | Sbjct 43787 TTCTTT-TTCAGATTCAAAAAGTCAAAAATATCTGCATGCCATGGTTCTAAGTAGATAGC 43845 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | |||||| ||||| |||| || || |||| || ||||| |||| ||||| |||| Sbjct 43846 GAATGCTCCAGGTCTCTTATTCCCACCTTGATCAACATATCGTGCTGTATTATTGTATAC 43905 Query 38211 TCTTAACATAGGTACTATACCATTAGA 38237 ||| | || || |||| ||||| || Sbjct 43906 TCTGAGAATTGGAACTAGTCCATTGGA 43932 >seq6000 Length=2059021 Score = 116 bits (128), Expect = 3e-21 Identities = 243/359 (68%), Gaps = 10/359 (3%) Strand=Plus/Minus Query 37538 TACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGA 37597 |||| || ||||| || | | ||| ||| | | |||| | |||||||||||||| Sbjct 208024 TACCGATAGGTCTGTGCCTTTGATTGGATTTCTTTGCTTCTGGGATTGGATAATAATTGA 207965 Query 37598 TATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGA 37657 | ||||||| |||| || ||| || | || ||| || | | | | | ||| |||| Sbjct 207964 TGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTCTTTAGCTTTTCGA 207905 Query 37658 ACAT--AAA---TACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACA 37712 | || ||| | || ||| |||| ||| || | ||| || | | |||||| Sbjct 207904 A-ATCGAAAGTTTTCGAGCTTACAAACATATTGACG----GCAATCGAAGCCAAATTACA 207850 Query 37713 TACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCT 37772 | ||||||||||||| || | |||||| ||| ||||| |||| ||||| || | Sbjct 207849 TGCAGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTGCAGAAGTTACTACATTT 207790 Query 37773 AATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATA 37832 |||||||| | ||| ||||| ||||| ||||||| ||||||||| | || || Sbjct 207789 TATTGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTA 207730 Query 37833 CGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA 37891 || ||||| ||||| ||| || ||| ||||| ||||||| ||| |||| || Sbjct 207729 AGGAGTTCCAGTTTCTACTTGTGCTACGAGAATAGCAGTCCATAATTCTCTCGCTTGAA 207671 Score = 116 bits (128), Expect = 3e-21 Identities = 213/310 (69%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 37045 TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTA 37104 || ||||||||||||| | | || | ||| || || || | || ||| | || ||| Sbjct 208894 TGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCATCCCAGAGATCTCTT 208835 Query 37105 CTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTT 37164 ||| |||| | | || ||||| || || | || ||||| || ||||| Sbjct 208834 TCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTCAATTTCTCCGGAGGGTACTCGC 208775 Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 ||| |||| | || ||||| || ||||| | |||||||| || | ||| ||||| | Sbjct 208774 CTTACATATGTGTTACTAGTGTAAGGTTCGACCGACTCATTGTTTCCTAAAATTTGCGCA 208715 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATT 37284 || || ||||| ||||| || || || | || |||||| | ||||||| | || ||| Sbjct 208714 GTCGAAGCAGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTATT 208655 Query 37285 CTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCAT 37342 | | ||| || || |||||||||| || || || ||| | | || ||||||||||| Sbjct 208654 TTTTCTTTCAGCGCACTCCAATCCCACAAGTCAGTCGGGCTAGCGTT--CCACATATCAT 208597 Query 37343 ATTGTAGAAT 37352 |||| || || Sbjct 208596 ATTGCAGGAT 208587 >seq4970 Length=98340 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||||||||| || || ||| |||||||||||| || | |||||||||||| | || || Sbjct 66056 ATATGTATCGATCAACAAAGAATACATTTCTGAGTGGACATTTTCCATAGCAACCTGGAA 66115 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||| || || |||||||||| | || || || | || ||||| | | ||| Sbjct 66116 ACCATAAAAGCAGCGTGCCTCTGTAACTTGGACCTCTTGACTGAACCTTTCTACAAGATT 66175 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056 ||| || ||||| |||||| || || || ||||||| Sbjct 66176 CTCGTTGACAATTCCATCAGAAGCAGCGAAGAATGCTA 66213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468451013200560