Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11430 141 1e-28 seq6000 134 2e-26 >seq11430 Length=555723 Score = 141 bits (156), Expect = 1e-28 Identities = 237/339 (70%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 ||||||||||||| || || | ||| || ||| |||||||| || ||||||||||| | Sbjct 42899 TACCGATAGGTCTGTGCCTTTGATTGGATCTTTTTGCTTCTGGGATTGGATAATAATTGA 42958 Query 65641 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG-TTTGAGA 65699 | || || | ||||| || ||||| || |||||| ||| |||||||| ||| || Sbjct 42959 TGTCGATTACGTTATTCAGGTTTCTAGTAACTACTTTAGTCACTTCCTTCAGCTTTTCGA 43018 Query 65700 AAATCAAATCGCTC-ATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAAC 65758 || ||| || | | |||| ||||| || | |||| || |||| ||||| || Sbjct 43019 AATCGAAAGTTTTCGAGC--TTACGAACATATTGACGGCAATCGAAGCCAAGTTACATAC 43076 Query 65759 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 65818 || || |||| | | | |||||||| || || ||||| | |||||||| || || Sbjct 43077 AGCAACTTCATCCGGACTAGAATATTGTACGATTTCGGTGCACAAGTTACTACATTTTAT 43136 Query 65819 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 65878 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 43137 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 43196 Query 65879 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 65917 ||| |||||||| | || ||| | | ||| || |||| Sbjct 43197 AGTTCCAGTTTCTACTTGTGATACGAGAATAGCAGTCCA 43235 Score = 131 bits (144), Expect = 2e-25 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| || || ||| || ||| |||| ||| || || || || | ||| | | ||| Sbjct 42044 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCGTCCCAGAGATCTCT 42103 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 || |||||| ||| || | ||| ||||| || ||||| |||||||| || | ||||| Sbjct 42104 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTGGAATTCTCCGGAGAGTACTCG 42163 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || || || ||||| || || || || | |||||||| ||||| |||||||| || Sbjct 42164 CCTTACATATATGTTACTAGTGTAAGGCTCGATCGACTCATTGTTTCCTAAAATTTGCGC 42223 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 ||| || || ||||||||||| || | ||||| | |||||||| || | | | | || Sbjct 42224 AGTCGAAGCTGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTAT 42283 Query 65327 TTTATCTTTTAG 65338 ||| ||||| || Sbjct 42284 TTTTTCTTTCAG 42295 >seq6000 Length=2059021 Score = 134 bits (148), Expect = 2e-26 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| || || ||| || ||| |||| ||| || || || |||| ||| | | ||| Sbjct 208895 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCATCCCAGAGATCTCT 208836 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 || |||||| ||| || | ||| ||||| || |||| || |||||| || ||||| Sbjct 208835 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTCAATTTCTCCGGAGGGTACTCG 208776 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || || | ||||| || || ||||| || |||||||| ||||| |||||||| || Sbjct 208775 CCTTACATATGTGTTACTAGTGTAAGGTTCGACCGACTCATTGTTTCCTAAAATTTGCGC 208716 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 ||| || |||||||||||||| || | ||||| | |||||||| || | | | | || Sbjct 208715 AGTCGAAGCAGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTAT 208656 Query 65327 TTTATCTTTTAG 65338 ||| ||||| || Sbjct 208655 TTTTTCTTTCAG 208644 Score = 129 bits (142), Expect = 8e-25 Identities = 218/312 (70%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 ||||||||||||| || || | ||| || | | |||||||| || ||||||||||| | Sbjct 208024 TACCGATAGGTCTGTGCCTTTGATTGGATTTCTTTGCTTCTGGGATTGGATAATAATTGA 207965 Query 65641 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG-TTTGAGA 65699 | ||||| | |||| || ||||| || |||||| ||| | ||| || ||| || Sbjct 207964 TGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTCTTTAGCTTTTCGA 207905 Query 65700 AAATCAAATCGCTC-ATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAAC 65758 || ||| || | | |||||||||| || | |||| || |||| |||||| | Sbjct 207904 AATCGAAAGTTTTCGAGC--TTACAAACATATTGACGGCAATCGAAGCCAAATTACATGC 207847 Query 65759 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 65818 || || |||| | | | |||||||| || || ||||| | |||||||| || || Sbjct 207846 AGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTGCAGAAGTTACTACATTTTAT 207787 Query 65819 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 65878 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 207786 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 207727 Query 65879 AGTACCAGTTTC 65890 ||| |||||||| Sbjct 207726 AGTTCCAGTTTC 207715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658069146011160