Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11430 156 6e-33 seq6000 138 2e-27 >seq11430 Length=555723 Score = 156 bits (172), Expect = 6e-33 Identities = 220/309 (71%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| || || ||| || ||| |||| ||| || || ||||| | ||| | | ||| Sbjct 42044 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCGTCCCAGAGATCTCT 42103 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 || |||||| ||| || | ||| ||||| || ||||| |||||||| || | ||||| Sbjct 42104 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTGGAATTCTCCGGAGAGTACTCG 42163 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || || || ||||| || || || || | ||| ||||| ||||| |||||||| || Sbjct 42164 CCTTACATATATGTTACTAGTGTAAGGCTCGATCGACTCATTGTTTCCTAAAATTTGCGC 42223 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 ||| || || || |||||||| || | ||||| | |||||||| || | | | || Sbjct 42224 AGTCGAAGCTGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTAT 42283 Query 79206 TTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATA 79265 ||| ||||| || | ||||||||| | |||| ||| ||| ||||| | |||||| Sbjct 42284 TTTTTCTTTCAGCGCACTCCAATCCCACAAGTCAGTCGGAGTAACGTTCCACATATCATA 42343 Query 79266 TTGTAGAAT 79274 |||||| || Sbjct 42344 TTGTAGGAT 42352 Score = 138 bits (152), Expect = 2e-27 Identities = 235/339 (69%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 ||||||||||||| || || | ||| || ||| |||||||| || ||||||||||| | Sbjct 42899 TACCGATAGGTCTGTGCCTTTGATTGGATCTTTTTGCTTCTGGGATTGGATAATAATTGA 42958 Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 79579 | || || | ||||| || || || | |||||| ||| ||||| || || | Sbjct 42959 TGTCGATTACGTTATTCAGGTTTCTAGTAACTACTTTAGTCACTTCCTTCAGCTTTTCGA 43018 Query 79580 AATC--AAATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAAC 79637 |||| || | || | | |||| ||||| || | || | || |||| ||||| || Sbjct 43019 AATCGAAAGTTTTCGAGC--TTACGAACATATTGACGGCAATCGAAGCCAAGTTACATAC 43076 Query 79638 GGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAAT 79697 || || |||| | | | |||||||| ||||| ||||| | ||||||||| || || Sbjct 43077 AGCAACTTCATCCGGACTAGAATATTGTACGATTTCGGTGCACAAGTTACTACATTTTAT 43136 Query 79698 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGG 79757 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 43137 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 43196 Query 79758 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 ||| |||||||| | || ||| | | ||| || |||| Sbjct 43197 AGTTCCAGTTTCTACTTGTGATACGAGAATAGCAGTCCA 43235 >seq6000 Length=2059021 Score = 138 bits (152), Expect = 2e-27 Identities = 219/312 (70%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 ||||||||||||| || || | ||| || | | |||||||| || ||||||||||| | Sbjct 208024 TACCGATAGGTCTGTGCCTTTGATTGGATTTCTTTGCTTCTGGGATTGGATAATAATTGA 207965 Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 79579 | ||||| | |||| || || || | |||||| ||| | |||||| || | Sbjct 207964 TGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTCTTTAGCTTTTCGA 207905 Query 79580 AATC--AAATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAAC 79637 |||| || | || | | |||||||||| || | || | || |||| |||||| | Sbjct 207904 AATCGAAAGTTTTCGAGC--TTACAAACATATTGACGGCAATCGAAGCCAAATTACATGC 207847 Query 79638 GGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAAT 79697 || || |||| | | | |||||||| ||||| ||||||| ||||||||| || || Sbjct 207846 AGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTGCAGAAGTTACTACATTTTAT 207787 Query 79698 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGG 79757 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 207786 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 207727 Query 79758 AGTACCAGTTTC 79769 ||| |||||||| Sbjct 207726 AGTTCCAGTTTC 207715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718155681642360