Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq7268 107 1e-18 seq4730 91.5 1e-13 >seq7268 Length=409911 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| |||| |||||||| | |||||| || || | || ||| | || || | || Sbjct 284823 ATGGAGAGTGGATTCCTTTTGAATATTGTAGTCTGAAAGCGTGCGTCCATCTTCAAGCTG 284764 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| |||||||| ||||| | ||| ||||| | || | ||||||||| || || Sbjct 284763 TTTACCGGCAAAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTT 284704 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | | || || | ||| ||||||| |||||||| || | ||||| |||||||| || Sbjct 284703 CGCCTTCACGTTCTCAATTGTGTCGGAGGCCTCGACCTCCAGAGTTATTGTTTTTCCTGT 284644 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||||||||| Sbjct 284643 AAGGGTCTTGACGAAAATTTGCAT 284620 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||| || || | ||| || | || || | ||||| |||||||| Sbjct 282531 CTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTACCGGCAAA 282472 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| | ||| ||||| | || | ||||||||| || || | | || || | Sbjct 282471 GATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTT 282412 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||||| |||||||| || | ||||| |||||||| || || || || || Sbjct 282411 CTCAATTGTGTCGGAGGCCTCGACCTCCAGAGTTATTGTTTTTCCAGTAAGGGTCTTGAC 282352 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 282351 GAAAATTTGCAT 282340 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || | ||||| |||| |||||||| | |||||| || || Sbjct 284618 CCACCACGGAGGCGAAGTACAAGATGGAGAGTGGATTCCTTTTGAATATTGTAGTCTGAA 284559 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || | |||||||| ||||| || |||| ||| ||||| | || Sbjct 284558 AGCGTGCGTCCATCTTCAAGCTGTTTGCCCGCAAAGATTAATCTCTGCTGATCTGGGGGA 284499 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | | || || | ||| || ||| ||||| || Sbjct 284498 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACATTCTCAATAGTATCGGAGGCCTCAACT 284439 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| ||||| ||||| || |||||||||||||| Sbjct 284438 TCCAATGTAATAGTTTTACCGGTGAGAGTCTTAACAAAAATTTGCAT 284392 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| |||| || || | ||||| ||| || ||||| | |||||| || || Sbjct 286899 GCCTCCACGGAGTCGCAATACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGA 286840 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||| || | || || | ||||| ||||| || ||||||| ||| ||||| | || Sbjct 286839 AAGTGTGCGGCCATCTTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGG 286780 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || || | ||||| | ||| || ||| || || || Sbjct 286779 AATACCTTCTTTGTCTTGAATTTTAGCCTTGACATTCTCAATAGTATCGGAGGCTTCAAC 286720 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||| ||||| || || || || || |||||||||||||| Sbjct 286719 TTCCAGCGTTATTGTTTTCCCCGTGAGGGTCTTTACAAAAATTTGCAT 286672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || ||||| | || | ||||| |||| |||||||| | ||| || || || Sbjct 282795 GCCTCCTCGAAGTCTCAGTACAAGATGGAGAGTGGATTCCTTTTGAATATTATAGTCAGA 282736 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||| || | || || | ||||| || || || ||||| | ||| || || | || Sbjct 282735 AAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGG 282676 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || || ||||||| | ||| || ||| ||||| || Sbjct 282675 AATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGATGCCTCAAC 282616 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||| ||||| || || || || || |||||||||||||| Sbjct 282615 TTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAACAAAAATTTGCAT 282568 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | || || | || | || ||||||||| | |||||| || || Sbjct 283479 GCCTCCACGTAGACGCAATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAGA 283420 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | |||||| | || || | |||||||| || || ||||| | |||||| || | || Sbjct 283419 AAGTGTACGGCCATCTTCGAGCTGTTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGGGG 283360 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || || ||||||| | | | || ||| ||||| || Sbjct 283359 AATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCTATAGTATCGGATGCCTCAAC 283300 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||| ||||| || || || || || |||||||||||||| Sbjct 283299 TTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAACAAAAATTTGCAT 283252 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||| || || | ||| || | || || | ||||| |||||||| Sbjct 284127 CTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCGGCAAA 284068 Query 42978 AATCAATCGCTGTTG-ATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTC 43036 || |||| || || || || || | ||||||||| || ||| | | || || Sbjct 284067 GATTAATCTTTGCTGCATTGGA-GGAATACCTTCTTTATCTTCGATTTTCGCCTTCACGT 284009 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| ||||||| |||||||| || | ||||| |||||||| || || || || | Sbjct 284008 TCTCAATTGTGTCGGAGGCCTCGACCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTGA 283949 Query 43097 CAAAAATTTGCAT 43109 | ||||||||||| Sbjct 283948 CGAAAATTTGCAT 283936 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || || | ||||| |||| |||||||| | |||||||||||| Sbjct 285302 CCCCCACGAAGGCGCAATACAAGATGGAGAGTGGATTCCTTTTGAATATTGTAATCGGAG 285243 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | || || |||||||| ||||||| ||| || || | || Sbjct 285242 AGCGTGTGGCCATCTTCAAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGTTCCGGGGGG 285183 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| || | || || | ||| |||||| ||||| || Sbjct 285182 ATCCCTTCTTTATC-CTGAATTTTTGCCTTCACATTCTCAATTGTGTCAGAGGCCTCTAC 285124 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || ||||| || || ||||||||||| Sbjct 285123 TTCCAATGTAATAGTTTTACCAGTCAGAGTCTTAACGAAAATTTGCAT 285076 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||| ||||| | ||| | | || || | || || ||||| || Sbjct 283670 TCCTTCTGAATATTGTAGTCGGAAAGTGTGTGGCCATCTTCAAGCTGCTTCCCGGCGAAG 283611 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCT---TTGACT 43035 ||||||| |||||| || | || | || ||||| || |||| | | | ||||| Sbjct 283610 ATCAATCTCTGTTGTTCTGGTGGGATTCCCTCTTTATC-CTGA--ATTTTTGACTTGACG 283554 Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 | ||| ||| || ||||| || || | |||||| ||||||||||| || || || Sbjct 283553 TTCTCAATTGTATCAGAGGCCTCTACTTCCAACGTTATGGTTTTTCCGGTAAGGGTCTTA 283494 Query 43096 ACAAAAATTTGCAT 43109 |||||||||||||| Sbjct 283493 ACAAAAATTTGCAT 283480 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || | ||| | |||| || ||||| | |||||| || || Sbjct 283934 CCACCACGGAGACGAAGTACAAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAA 283875 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || || | || || ||||| || ||||| | ||| || || | || Sbjct 283874 AGTGTGCGGCCATCTTCAAGCTGCTTACCGGCGAAGATCAACCTCTGCTGGTCTGGAGGA 283815 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || || | | || || | ||| ||||||| ||||| || Sbjct 283814 ATACCCTCTTTGTCTTGAATTTTCGCCTTTACATTCTCAATTGTGTCGGAGGCCTCAACT 283755 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || || ||||| |||||||||||||| Sbjct 283754 TCCAATGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 283708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||| | |||| |||||||| | ||||| || || Sbjct 286442 CCACCACGCAGACGAAGTACAAGATGAAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAA 286383 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || |||| ||||| || || || ||||| | ||| || || | || Sbjct 286382 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 286323 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| || | || || | | | || ||| |||||| || Sbjct 286322 ATGCCCTCTTTATC-CTGAATCTTTGCCTTCACATTCTCGATAGTATCGGAAGCCTCAAC 286264 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| || || || ||||| ||||||||||||||||| Sbjct 286263 TTCTAAAGTAATAGTCTTGCCAGTGAGAGTCTTCACAAAAATTTGCAT 286216 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | || || | || | || ||||||||| | |||||| || || Sbjct 283251 GCCTCCACGAAGACGCAATACAAGGTGCAATGTTGACTCCTTTTGAATATTGTAGTCAGA 283192 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||| || | || || | |||||||| || || ||||| | ||| ||||| | || Sbjct 283191 AAGTGTGCGGCCATCTTCGAGCTGTTTGCCCGCGAAGATCAACCTCTGCTGATCTGGTGG 283132 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || || | || || | ||| |||||| || || || Sbjct 283131 AATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCAATTGTGTCTGACGCTTCAAC 283072 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| |||||||| || || || || || ||||||||||| Sbjct 283071 CTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTAACGAAAATTTGCAT 283024 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || || | | ||| | ||||| ||| ||||| || | |||||| || || Sbjct 285531 GCCACCCCGAAGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGA 285472 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTG-ATCGGCCG 43000 | ||| || | || || | ||||| ||||| || || || | || || || || | Sbjct 285471 AAGTGTGCGACCATCTTCAAGCTGTTTACCGGCGAAGATTAACCTTTGCTGGATTGGAGG 285412 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | |||||| || || ||| | | || || | ||| ||||||| ||||| | Sbjct 285411 G-ATACCTTCCTTATCTTGGATTTTCGCCTTTACGTTCTCAATTGTGTCGGAGGCCTCAA 285353 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| || ||||| ||||| || ||||| || |||||||||||||| Sbjct 285352 CTTCTAAAGTAATAGTCTTTCCAGTAAGAGTCTTAACAAAAATTTGCAT 285304 >seq4730 Length=3448589 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || |||| || |||||||| | ||| |||||| || | ||| || ||||| Sbjct 2520342 CCACCGCGAAGTCGCAAGACCAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGGAA 2520401 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || ||||| ||||| || ||||| ||||||||||| ||||||| || Sbjct 2520402 AGGGTTCTACCATCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGA 2520461 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| |||| || | | | || || ||| || || Sbjct 2520462 ATACCTTCCTTATCTTGAATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAACT 2520521 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || ||||| || || ||||| ||||| || |||||| Sbjct 2520522 TCCAGGGTGATGGTCTTTCCTGTAAGCGTTTTGACAAAGATCTGCATT 2520569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381311040578742