Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6000 149 8e-31 seq11430 143 4e-29 seq4970 87.8 2e-12 >seq6000 Length=2059021 Score = 149 bits (164), Expect = 8e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| || || ||| || ||| |||| |||||| || ||||||| ||| | | ||| Sbjct 208895 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCATCCCAGAGATCTCT 208836 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || |||||| ||| || | ||||||||| || |||| || |||||| || ||||| Sbjct 208835 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTCAATTTCTCCGGAGGGTACTCG 208776 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 | || | ||||| || || ||||| || |||||||| ||||| |||||||| || Sbjct 208775 CCTTACATATGTGTTACTAGTGTAAGGTTCGACCGACTCATTGTTTCCTAAAATTTGCGC 208716 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGT 71280 ||| || |||||||||||||| || | ||||||| |||||||| |||||| Sbjct 208715 AGTCGAAGCAGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGT 208664 Score = 143 bits (158), Expect = 4e-29 Identities = 220/312 (71%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||||||||||||||| || | ||| || | | |||||||| || ||||||||||| | Sbjct 208024 TACCGATAGGTCTGTGCCTTTGATTGGATTTCTTTGCTTCTGGGATTGGATAATAATTGA 207965 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 | ||||| | |||| || ||||| | |||||| ||| | |||||| || | Sbjct 207964 TGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTCTTTAGCTTTTCGA 207905 Query 71663 AATC--AAATCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAAC 71720 |||| || | | | | | ||||||||| || | ||||| || |||| |||||| | Sbjct 207904 AATCGAAAGTTTTCGAGC--TTACAAACATATTGACGGCAATCGAAGCCAAATTACATGC 207847 Query 71721 GGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGAT 71780 || || |||| | | | |||||||| |||||| ||||| | |||||||| || || Sbjct 207846 AGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTGCAGAAGTTACTACATTTTAT 207787 Query 71781 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGG 71840 ||||||| |||||| ||||| || ||||| ||| ||||| | || | || Sbjct 207786 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 207727 Query 71841 AGTACCAGTTTC 71852 ||| |||||||| Sbjct 207726 AGTTCCAGTTTC 207715 >seq11430 Length=555723 Score = 143 bits (158), Expect = 4e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| || || ||| || ||| |||| |||||| || ||||| | ||| | | ||| Sbjct 42044 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCGTCCCAGAGATCTCT 42103 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || |||||| ||| || | ||||||||| || ||||| |||||||| || | ||||| Sbjct 42104 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTGGAATTCTCCGGAGAGTACTCG 42163 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 | || || ||||| || || || || | |||||||| ||||| |||||||| || Sbjct 42164 CCTTACATATATGTTACTAGTGTAAGGCTCGATCGACTCATTGTTTCCTAAAATTTGCGC 42223 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGT 71280 ||| || || ||||||||||| || | ||||||| |||||||| |||||| Sbjct 42224 AGTCGAAGCTGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGT 42275 Score = 141 bits (156), Expect = 1e-28 Identities = 236/339 (70%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||||||||||||||| || | ||| || ||| |||||||| || ||||||||||| | Sbjct 42899 TACCGATAGGTCTGTGCCTTTGATTGGATCTTTTTGCTTCTGGGATTGGATAATAATTGA 42958 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 | || || | ||||| || ||||| | |||||| ||| ||||| || || | Sbjct 42959 TGTCGATTACGTTATTCAGGTTTCTAGTAACTACTTTAGTCACTTCCTTCAGCTTTTCGA 43018 Query 71663 AATC--AAATCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAAC 71720 |||| || | | | | | |||| |||| || | ||||| || |||| ||||| || Sbjct 43019 AATCGAAAGTTTTCGAGC--TTACGAACATATTGACGGCAATCGAAGCCAAGTTACATAC 43076 Query 71721 GGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGAT 71780 || || |||| | | | |||||||| ||||| ||||| | |||||||| || || Sbjct 43077 AGCAACTTCATCCGGACTAGAATATTGTACGATTTCGGTGCACAAGTTACTACATTTTAT 43136 Query 71781 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGG 71840 ||||||| |||||| ||||| || ||||| ||| ||||| | || | || Sbjct 43137 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 43196 Query 71841 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 ||| |||||||| | || ||| | | ||| || |||| Sbjct 43197 AGTTCCAGTTTCTACTTGTGATACGAGAATAGCAGTCCA 43235 >seq4970 Length=98340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42315 TTTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 |||| ||| || || | ||||||||||||||| | | |||||||||||| || | | Sbjct 66037 TTTCTTTAGCGTCCTTGATATATGTATCGATCAACAAAGAATACATTTCTGAGTGGACAT 66096 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 |||| || || | ||| || || || || || | ||||| ||||| || || ||| || Sbjct 66097 TTTCCATAGCAACCTGGAAACCATAAAAGCAGCGTGCCTCTGTAACTTGGACCTCTTGAC 66156 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 || | ||| | | ||| ||||| || ||||| ||| || || || || || || | Sbjct 66157 TGAACCTTTCTACAAGATTCTCGTTGACAATTCCATCAGAAGCAGCGAAGAATGCTAACA 66216 Query 42495 CATGTTTTATAAAATATTTTTCG 42517 | || ||| |||| || ||| Sbjct 66217 CGTGAGATATGAAATGCTTCTCG 66239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671033503965240