Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4730 113 5e-20 seq7268 93.3 4e-14 seq11430 84.2 2e-11 >seq4730 Length=3448589 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || || |||| || || || || ||||| || || ||| Sbjct 2520114 CCTCCGCGAAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGTATATTATAGTCGGAA 2520173 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | ||||||||||||| |||||| ||| |||||||| ||||| Sbjct 2520174 AGTGTTCTTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 2520233 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || ||| | | || | ||| || | | ||| || Sbjct 2520234 ATTCCTTCCTTATCTTGAATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAACC 2520293 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | |||||| ||||| |||||||| Sbjct 2520294 TCCAGGGTGATGGTCTTTCCTGTGAGTGTTTTCACGAAGATTTGCAT 2520340 Score = 113 bits (124), Expect = 5e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||||||| || || | || ||||| || || |||||||| || | Sbjct 2521254 CCTCCGCGAAGACGCAAAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC--TG 2521311 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | | ||| |||||| | |||||||||||| |||| | |||||| || ||||||| Sbjct 2521312 ATAGAGTTCGTCCGTCTTCTAACTGTTTACCAGCAAAGATTAAACGTTGTTGTTCGGGAG 2521371 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 |||| ||||| || || || || ||| | | ||| | |||||||| | || | Sbjct 2521372 GTATTCCTTCCTTATCTTGTATCTTAGCTTTCACGTTTTCTATCGTGTCCGAAGCCTCAA 2521431 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | || | || || || || | ||||||||| || || |||||| Sbjct 2521432 CTTCCAGGGTGATGGTTTTACCCGTGAGTGTTTTTACAAAGATCTGCATA 2521481 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| |||||| || || || | || ||||| ||||| |||||||| || Sbjct 2519886 CCCCCGCGTAGACGCAAGACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAA 2519945 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||||||||||||| |||||| |||||||||||| ||||| Sbjct 2519946 AGGGTTCTTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 2520005 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || |||| | || | ||| || | | ||| || Sbjct 2520006 ATTCCTTCCTTATCTTGAATCTTGGCCTTTACATTCTCTATCGTATCTGAAGCTTCAACC 2520065 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || |||| ||||| || || || ||||| Sbjct 2520066 TCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACAAAGATCTGCAT 2520112 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || || |||| || || || || || ||||| || ||| Sbjct 2520570 CCTCCGCGAAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCGGAA 2520629 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||||| ||| |||||||| ||||| Sbjct 2520630 AGAGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 2520689 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || ||||| | || | ||| || | | ||| || Sbjct 2520690 ATTCCTTCCTTATCTTGAATCTTGGCTTTTACGTTCTCTATCGTATCTGAAGCTTCAACC 2520749 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | |||||| ||||| |||||||| Sbjct 2520750 TCCAAGGTGATGGTCTTTCCTGTGAGTGTTTTCACGAAGATTTGCAT 2520796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| || ||||| | ||||| || || ||||| || || ||| Sbjct 2520798 CCTCCGCGAAGTCGCAAGACCAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGGAA 2520857 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||||| ||| |||||||| || || Sbjct 2520858 AGAGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGA 2520917 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || ||| | | || | ||| || | | ||| ||| Sbjct 2520918 ATTCCTTCCTTATCTTGAATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAACT 2520977 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || |||| ||||| || || || ||||| Sbjct 2520978 TCCAGGGTGATGGTCTTCCCTGTCAGAGTTTTGACAAAGATCTGCAT 2521024 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || ||||| | ||||| || || ||||| || || ||| | || || Sbjct 2520354 CGCAAGACCAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGGAAAGGGTTCTACCA 2520413 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | |||||||||||| |||||| || |||||||||||||| || ||||| || Sbjct 2520414 TCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGAATACCTTCCTTA 2520473 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | || | ||| || | | ||| ||||| | || | Sbjct 2520474 TCTTGAATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAACTTCCAGGGTGATG 2520533 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || | ||||| || || || ||||| Sbjct 2520534 GTCTTTCCTGTAAGCGTTTTGACAAAGATCTGCAT 2520568 >seq7268 Length=409911 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || | || | |||||| || ||||| || ||||| || Sbjct 282567 GCCACCACGAAGACGCAATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAGA 282508 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| |||||||| |||||||| ||| |||||| | |||||||| || || Sbjct 282507 AAGTGTGCGGCCATCTTCGAGCTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGTGG 282448 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| || | | || | ||||| | || || || Sbjct 282447 AATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCAATTGTGTCGGAGGCCTCGAC 282388 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || || | || || ||||| ||||||||| Sbjct 282387 CTCCAGAGTTATTGTTTTTCCAGTAAGGGTCTTGACGAAAATTTGCATA 282339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | |||| || | ||| | |||||| ||||| || || |||||||| Sbjct 283023 GCCTCCTCGAAGCCGCAGTACAAGATGCAGTGTAGACTCTTTCTGAATATTGTAATCAGA 282964 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || | || | ||||| || ||||| ||||| |||||| | |||||||| || | Sbjct 282963 AAGCGTTCGTCCA-TCTTCAAGCTGTTTGCCAGCGAAGATCAACCTCTGCTGATCAGGTG 282905 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||||||||| |||||| || | | || | |||||| | | ||| | Sbjct 282904 GAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCTATCGTGTCAGACGCTTCAA 282845 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| | || || || || | || || ||||| |||||||| Sbjct 282844 CCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTAACGAAAATTTGCAT 282796 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | |||||| || | || | ||| || || ||||| || ||||| || Sbjct 283251 GCCTCCACGAAGACGCAATACAAGGTGCAATGTTGACTCCTTTTGAATATTGTAGTCAGA 283192 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| |||||||| ||||| || || |||||| | |||||||| || || Sbjct 283191 AAGTGTGCGGCCATCTTCGAGCTGTTTGCCCGCGAAGATCAACCTCTGCTGATCTGGTGG 283132 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||||||| || | | ||| | ||||| | | ||| || Sbjct 283131 AATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCAATTGTGTCTGACGCTTCAAC 283072 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || | || || ||||| |||||||| Sbjct 283071 CTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTAACGAAAATTTGCAT 283024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||||| || | ||| | || ||||||||||| || ||||| || Sbjct 286899 GCCTCCACGGAGTCGCAATACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGA 286840 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| |||||||| |||||||| || |||||| | |||||||| || || Sbjct 286839 AAGTGTGCGGCCATCTTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGG 286780 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| || | | || | || || | || ||| || Sbjct 286779 AATACCTTCTTTGTCTTGAATTTTAGCCTTGACATTCTCAATAGTATCGGAGGCTTCAAC 286720 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || || || || | || ||||| || |||||||| Sbjct 286719 TTCCAGCGTTATTGTTTTCCCCGTGAGGGTCTTTACAAAAATTTGCAT 286672 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTT 143039 ||| | |||||| || ||||| || ||||| || | ||||| || | ||||| || | Sbjct 282315 ATGCAGTGTAGACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGTCCA-TCTTCAAGCT 282257 Query 143040 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTT 143099 |||| || || |||||| | |||||||| || || || ||||||||||| ||||| Sbjct 282256 GTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGAATTT 282197 Query 143100 TTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 143159 || || | | ||| | ||||| | | ||| || || | || | || || || | Sbjct 282196 TTGCCTTAACATTTTCAATTGTGTCTGATGCTTCAACCTCTAAGGTTATTGTTTTTCCAG 282137 Query 143160 TCAATGTTTTTACGAATATTTGCATA 143185 ||||||| || ||||| || |||||| Sbjct 282136 TCAATGTCTTAACGAAGATCTGCATA 282111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| | ||| | || | ||| | || ||||| ||||| || ||||| || Sbjct 284847 GCCACCTCGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTTTGAATATTGTAGTCTGA 284788 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | |||| || | ||||| || |||||||| ||| |||||| | |||||||| || | Sbjct 284787 AAGCGTGCGTCCA-TCTTCAAGCTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGTG 284729 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||||||||| |||||| || | | || | ||||| | || || | Sbjct 284728 GAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCAATTGTGTCGGAGGCCTCGA 284669 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || | ||| | || || || || | || || ||||| ||||||||| Sbjct 284668 CCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCATA 284619 >seq11430 Length=555723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 157047 TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTA 157106 |||||||||||||||| || | |||||||| ||| ||| || || ||||||||| Sbjct 43046 TATTGACGGCAATCGAAGCCAAGTTACATACAGCAACTTCATCCGGACTAGAATATTGTA 43105 Query 157107 CTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGC 157166 | ||||| | ||||| || || |||||||| ||| ||| ||||| ||| | Sbjct 43106 CGATTTCGGTGCACAAGTTACTACATTTTATTGTTCCTATATTTTGGTGATTTGATTTAC 43165 Query 157167 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTG 157215 | || ||| || || || |||||||| || || || ||||| |||| Sbjct 43166 GATTACAATGATCTTTATACAACATGTAAGGAGTTCCAGTTTCTACTTG 43214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506934551569680