Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq7268 104 2e-17 >seq7268 Length=409911 Score = 104 bits (114), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAGCTGTTT 18900 || || ||||||||||||||||| || | | || |||||| || |||||||| Sbjct 284588 GTGGATTCCTTTTGAATATTGTAGTCTGAAAGCGT----GCGTCCATCTTCAAGCTGTTT 284533 Query 18901 ACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTG 18960 |||||| | || | |||||||||||| ||| | ||| |||||||| |||||| Sbjct 284532 GCCCGCAAAGATTAATCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGGATTTTCGC 284473 Query 18961 TTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAA 19020 ||||| | | | ||||||| | ||| ||| | ||||| |||||||| || | Sbjct 284472 CTTTACATTCTCAATAGTATCGGAGGCCTCAACTTCCAATGTAATAGTTTTACCGGTGAG 284413 Query 19021 AGTTTTGACAAAAATTTGCAT 19041 ||| || |||||||||||||| Sbjct 284412 AGTCTTAACAAAAATTTGCAT 284392 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || || | |||||| ||||||||||||||||||||||| || | | ||| | | || Sbjct 283463 AATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAGAAAGTGTACGGCCATCT 283404 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || || | || | ||||| || || ||| | || |||||||| Sbjct 283403 TCGAGCTGTTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGGGGAATACCTTCTTTGTCT 283344 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 |||||| ||| || | | | ||||||| | ||| ||| | || || ||| Sbjct 283343 TGAATTTTAGCTTTGACATTTTCTATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTT 283284 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||||| | || || |||||||||||||| Sbjct 283283 TTACCTGTAAGGGTCTTAACAAAAATTTGCAT 283252 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||||||||| |||||||| || || | | ||| | | || || |||||| Sbjct 284366 TGCAGTGTAGACTCCTTCTGAATATTATAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGT 284307 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| || | || | |||||||| ||| ||| | || |||||||| |||||| Sbjct 284306 TTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATTTTA 284247 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | ||||||| | ||| ||| | || || ||||||||||| Sbjct 284246 GCTTTGACATTTTCAATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTA 284187 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | ||| || || ||||||||||| Sbjct 284186 AGAGTCTTAACGAAAATTTGCAT 284164 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || || | |||||| ||||||||||||||||||||||| || | | ||| | | || Sbjct 282551 AATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCT 282492 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||||||||| ||| | || | ||||||||||| || | || |||||||| Sbjct 282491 TCGAGCTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTGTCT 282432 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||||| || || | | | || ||| | ||| || | || || ||| Sbjct 282431 TGAATTTTCGCCTTCACGTTCTCAATTGTGTCGGAGGCCTCGACCTCCAGAGTTATTGTT 282372 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || | || ||||| ||||||||||| Sbjct 282371 TTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 282340 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || |||||||||||||| || || | | ||| | | || || ||||||||||| Sbjct 282764 GTGGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCA 282705 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || | |||||||| ||| ||| | || |||||||| |||||| ||| Sbjct 282704 GCGAAGATCAACCTCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATTTTAGCTTTG 282645 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||||| | ||| ||| | || || ||||||||||| | || Sbjct 282644 ACATTTTCAATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGGGTC 282585 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||||||||| Sbjct 282584 TTAACAAAAATTTGCAT 282568 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||||||||| ||||| |||| | ||| | | || |||||||||||||| Sbjct 286412 GTGGATTCCTTTTGAATGTTGTAGTCCGAAAGTGTGCGGCCATCTTCCAGCTGTTTACCA 286353 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || | |||||||| || || | ||||||||| || ||| || || Sbjct 286352 GCGAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCCTGAATCTTTGCCTTC 286293 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||||||| || ||| ||| | ||||| || || || || | ||| Sbjct 286292 ACATTCTCGATAGTATCGGAAGCCTCAACTTCTAAAGTAATAGTCTTGCCAGTGAGAGTC 286233 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||||||||| Sbjct 286232 TTCACAAAAATTTGCAT 286216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414509142217006