Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq7268 104 1e-17 seq4730 86.0 4e-12 >seq7268 Length=409911 Score = 104 bits (114), Expect = 1e-17 Identities = 167/235 (71%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| | ||||| || | ||||| ||| |||||||| || |||||||||||||| Sbjct 283022 CCTCCTCGAAGCCGCAGTACAAGATGCAGTGTAGACTCTTTCTGAATATTGTAATCAGAA 282963 Query 33203 AAATTGAGTTGGTC-ATC--CAAT-TGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | | ||| ||| ||| ||| || || ||| || || || | ||||| || | Sbjct 282962 A----GCGTTCGTCCATCTTCAAGCTGTTTGCCAGCGAAGATCAACCTCTGCTGATCAGG 282907 Query 33259 GGGTATGCCTTCTTTTTCGCTAAT---CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 || || |||||||| || ||| ||||| | || | | |||||||| | Sbjct 282906 TGGAATACCTTCTTTGTCTTGAATTTTCGCCT---TCACGTTCTCTATCGTGTCAGACGC 282850 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||| ||||||||||| |||||||| ||||| || || ||||||||||||||| Sbjct 282849 TTCAACCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTAACGAAAATTTGCATG 282795 Score = 104 bits (114), Expect = 1e-17 Identities = 159/221 (72%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | |||||||| ||||| ||||| |||||||| ||||| || || | || Sbjct 284150 CGCAATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAGA--AAGTGTGC-GG 284094 Query 33215 TCATC--CAAT-TGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 |||| ||| || || || ||| ||||| | |||||| | || || |||||| Sbjct 284093 CCATCTTCAAGCTGTTTACCGGCAAAGATTAATCTTTGCTGCATTGGAGGAATACCTTCT 284034 Query 33272 TT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGA 33328 || |||| | |||||| | || | | ||| |||||| || | || |||||| Sbjct 284033 TTATCTTCGATTTTCGCCT---TCACGTTCTCAATTGTGTCGGAGGCCTCGACCTCCAGA 283977 Query 33329 GTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| |||||||| ||||| || || |||||||||||||| Sbjct 283976 GTTATTGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 283936 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | |||||||| ||||| ||||| |||||||| ||||| | || | Sbjct 282554 CGCAATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCA 282495 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | || || || ||| || || | ||||| || | || || |||||||| Sbjct 282494 TCTTCGAGCTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTG 282435 Query 33275 TCGCTAAT---CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| ||||| | || | | ||| |||||| || | || ||||||||| Sbjct 282434 TCTTGAATTTTCGCCT---TCACGTTCTCAATTGTGTCGGAGGCCTCGACCTCCAGAGTT 282378 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| ||||| || || |||||||||||||| Sbjct 282377 ATTGTTTTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 282340 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | |||||||| ||||| ||||| |||||||| ||||| | || | Sbjct 283238 CGCAATACAAGGTGCAATGTTGACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCA 283179 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | || || || || || || | ||||| || | || || |||||||| Sbjct 283178 TCTTCGAGCTGTTTGCCCGCGAAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTG 283119 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| |||| | || ||| ||| ||||| | || ||| ||||||||| Sbjct 283118 TCTTGAATTTTTGCCT---TAACATTTTCAATTGTGTCTGACGCTTCAACCTCCAGAGTT 283062 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||||||| ||||| || || ||||||||||||||| Sbjct 283061 ATTGTTTTTCCTGTAAGGGTCTTAACGAAAATTTGCATG 283023 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC--CAAT 33223 ||||| ||| ||||| || || ||||| || ||||| || || | || |||| ||| Sbjct 284367 ATGCAGTGTAGACTCCTTCTGAATATTATAGTCAGA--AAGTGTGC-GGCCATCTTCAAG 284311 Query 33224 -TGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAAT 33282 || || ||| || || || | |||||||||| ||| || |||||||| || ||| Sbjct 284310 CTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAAT 284251 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 ||| || ||| ||| || ||| | | ||| ||||| ||||| ||||| || Sbjct 284250 TTTAGCTTTGACATTTTCAATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACC 284191 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||||| || ||||||||||||||| Sbjct 284190 TGTAAGAGTCTTAACGAAAATTTGCATG 284163 >seq4730 Length=3448589 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || || || || || ||||| || || | | | || | Sbjct 2521266 CGCAAAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGATAGAGTTCGTCCG 2521325 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || || || || ||| ||| ||||||||||| || || | ||||| ||||| || Sbjct 2521326 TCTTCTAACTGTTTACCAGCAAAGATTAAACGTTGTTGTTCGGGAGGTATTCCTTCCTTA 2521385 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| |||||||| | | ||| ||||| || || Sbjct 2521386 TCTTGTATCTTAGCTTTCACGTTTTCTATCGTGTCCGAAGCCTCAACTTCCAGGGTGATG 2521445 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||| || |||||||| || || ||||| Sbjct 2521446 GTTTTACCCGTGAGTGTTTTTACAAAGATCTGCAT 2521480 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || || ||||| || ||||| ||||| | | | | Sbjct 2519898 CGCAAGACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCG 2519957 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| || ||| ||| || ||||||||||| || | || || ||||| || Sbjct 2519958 TCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTA 2520017 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| ||||| | | ||||| || | || ||| ||||| || Sbjct 2520018 TCTTGAATCTTGGCC---TTTACATTCTCTATCGTATCTGAAGCTTCAACCTCCAGGGTG 2520074 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || |||||||| || || || ||||| Sbjct 2520075 ATGGTCTTTCCTGTCAGAGTTTTGACAAAGATCTGCAT 2520112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318728651599902