Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq7268 118 8e-22 >seq7268 Length=409911 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||| | || | ||| || ||| || |||||||||||||| || Sbjct 282794 CCTCCTCGAAGTCTCAGTACAAGATGGAGAGTGGATTCCTTTTGAATATTATAGTCAGAA 282735 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | || |||| || | ||||| || || || ||||||| ||||||||| | || Sbjct 282734 AGTGTGCGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGGA 282675 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||| ||| |||||| |||||| | ||| |||||| | | ||| || Sbjct 282674 ATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGATGCCTCAACT 282615 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||| ||||||||||| || | ||||| ||||| ||||||||| Sbjct 282614 TCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAACAAAAATTTGCATG 282567 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || ||||||||||| || | | || |||| || | ||||| || || || Sbjct 284355 CTCCTTCTGAATATTATAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCGAA 284296 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| ||||||||| | || | ||||||||| ||| |||||| |||||| | Sbjct 284295 GATCAACCTCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATT 284236 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| |||||| | | ||| || || | ||| ||||||||||| || | |||||| || Sbjct 284235 TTCAATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGAGTCTTAAC 284176 Query 44110 AAATATTTGCATG 44122 || ||||||||| Sbjct 284175 GAAAATTTGCATG 284163 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| ||||||||||| || || | | ||| |||| || | ||||| ||||| || Sbjct 283443 CTCCTTTTGAATATTGTAGTCAGAAAGTGTACGGCCATCTTCGAGCTGTTTGCCTGCGAA 283384 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| || ||||| | || | ||||||||| ||| |||||| |||||| | Sbjct 283383 GATCAACCTCTGTTGGTCTGGGGGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATT 283324 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | |||||| | | ||| || || | ||| ||||||||||| || | ||||| || Sbjct 283323 TTCTATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAAC 283264 Query 44110 AAATATTTGCATG 44122 ||| ||||||||| Sbjct 283263 AAAAATTTGCATG 283251 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || | ||| || ||| |||||||||||||| || || | | || |||| Sbjct 286883 AATACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCT 286824 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | ||||| || || || ||||| | ||||| || | || | ||||||||| ||| Sbjct 286823 TCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATACCTTCTTTGTCT 286764 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||||| | ||| |||||| | | || || || | ||| |||||| Sbjct 286763 TGAATTTTAGCCTTGACATTCTCAATAGTATCGGAGGCTTCAACTTCCAGCGTTATTGTT 286704 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | ||||| ||||| |||||||| Sbjct 286703 TTCCCCGTGAGGGTCTTTACAAAAATTTGCAT 286672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354723123788652