Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq5475 217 8e-52 >seq5475 Length=1341841 Score = 217 bits (240), Expect = 8e-52 Identities = 415/604 (69%), Gaps = 13/604 (2%) Strand=Plus/Plus Query 3542 AACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTTACACGA 3601 || |||| ||||||||||||||||| || ||| ||| |||||| | ||||| Sbjct 966296 AATAGAGCAGCTGTAAAAATGGCAAATATAGATAGAGCATGTAATTTCATGTTTACTAAT 966355 Query 3602 TTGAATG----ATG-GATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAG 3656 ||||| | | ||| | ||| || | |||| ||||||||||| ||||| || | Sbjct 966356 CCGAATGGCCTACGAGATGA--TGAGTTACTTCATTTCGCTGACGTATGTGCTGGACCTG 966413 Query 3657 GTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGA 3716 ||||||||||||||||| | || | || || |||||| | ||||| | ||| | | Sbjct 966414 GTGGTTTCAGTGAATATGTTTTGTATAGGAAAAAATGGCACGCTAAAGGATTTGGATTCA 966473 Query 3717 CGTTACGCGaaaaaaaTGATTTTCAACTGAACAGA-TTTTACGATAACTTTTCGGAAACT 3775 | ||| | |||| || || | || | | || ||||| | | | | |||||| Sbjct 966474 CTTTAAAAAATGAAAACGACTTCAAGCT-AGCTGACTTTTATGCTGGCCCCTGTGAAACT 966532 Query 3776 TTACACCCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAA 3835 || || || || ||||| || | ||||||||| | | || | ||||| || Sbjct 966533 TTCCATCCATACTATGGGCCAAGCGAAGATGGTAATGTTTTTGATCCTGCTAATCAAGAA 966592 Query 3836 GGTTTTTGTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCT 3895 | || | || || || ||| || ||||| | | | ||||||||||||||||||| || Sbjct 966593 GCATTCAGAGAGATTATAATGCAACATACCAATGATAGAGGTGTACATTTTATGATGTCT 966652 Query 3896 GACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATG 3955 || || || || ||||| || || ||||||||||| |||||||| || |||||| | | Sbjct 966653 GATGGAGGATTTTCGGTGGAAGGACAAGAAAATATACAAGAAATTTTGTCGAAACAATTA 966712 Query 3956 TATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGG--TGGTCATTGTGTTA 4013 ||| | ||||| ||||| | || ||||||| | ||| | || |||| ||| | Sbjct 966713 TATCTTTGTCAGTGTTTGGTGGCTCTGATGAT--TGTGAAAGAGCACGGACATTTTGTCA 966770 Query 4014 TCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGAT 4073 ||| | |||||| | ||||| || || || || || |||| || || ||||| | | Sbjct 966771 CAAAACTGTTCGATGTTTTTACTCCCTTCAGCGCGGGACTAGTTTACTTAATGTACCGTT 966830 Query 4074 CTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGAT 4133 ||| | ||||||||||||||||| | | || |||| || ||||||||| ||| Sbjct 966831 GTTTCGACGAGGTTTGTATTTTCAAACCAAACACCTCTAGACCAGCAAATTCTGAACGAT 966890 Query 4134 ATTT 4137 |||| Sbjct 966891 ATTT 966894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276511135108297