Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12359 203 5e-48 seq4730 158 2e-34 >seq12359 Length=518578 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || ||||||||||| || ||||||||||| |||||| Sbjct 257436 GCAAAGCGTCATAGGAAGGTTTTGCGTGATAACATCCAGGGTATCACCAAGCCCGCTATC 257377 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||||||||| || ||||||||| | |||||||| |||||||||| | | Sbjct 257376 CGTCGTCTGGCTCGTCGTGGCGGTGTCAAGCGTATTTCTGGATTAATCTATGAAGAAACT 257317 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | |||||| ||| ||| |||| ||| || || ||| |||||| Sbjct 257316 CGTGGTGTACTGAAGGTGTTCCTCGAGAACGTGATCCGTGACGCCGTCACCTACACCGAG 257257 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || || | ||||| |||| || || |||| |||||||| Sbjct 257256 CACGCCAAGAGGAAGACCGTGACAGCAATGGACGTCGTGTACGCCCTGAAGCGTCAAGGA 257197 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | |||||||| || ||||| Sbjct 257196 AGAACCCTCTATGGTTTCGGCGGTTAA 257170 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || ||||| ||||| || ||||||||||| || ||| Sbjct 212626 GCAAAGCGTCATAGAAAGGTTTTGCGTGATAATATCCAGGGTATCACCAAGCCTGCCATC 212567 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||||||||| || ||||| ||| | ||||| ||| |||| ||||| | | Sbjct 212566 CGTCGTCTGGCTCGTCGTGGCGGTGTCAAACGTATTTCTGGTTTGATCTACGAAGAAACT 212507 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | ||| | ||||| ||| ||| |||| ||||||| | ||||||||| Sbjct 212506 CGCGGTGTTCTTAAGGTTTTCCTTGAGAACGTGATCCGTGATGCTGTTACTTATACCGAG 212447 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | ||||| || || | ||||| |||| || || ||||| |||||||| Sbjct 212446 CACGCTAAGAGGAAGACCGTGACAGCAATGGACGTCGTGTACGCCTTGAAGCGTCAAGGA 212387 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | |||||||| || ||||| Sbjct 212386 AGAACCCTCTATGGTTTCGGCGGTTAA 212360 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || ||||||||||| || ||||||||||| || ||| Sbjct 242405 GCAAAGCGTCATAGGAAGGTTTTGCGTGATAACATCCAGGGTATCACCAAGCCCGCCATC 242346 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||||||||| || ||||||||| | ||||| ||| |||| ||||| | | Sbjct 242345 CGTCGTCTGGCTCGTCGTGGCGGTGTCAAGCGTATTTCTGGCTTGATCTACGAAGAAACT 242286 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| ||| |||| ||| || || || || ||| Sbjct 242285 CGTGGTGTACTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACTTACACTGAG 242226 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || || | ||||| |||| || || |||| |||||||| Sbjct 242225 CACGCAAAGAGGAAGACCGTGACAGCAATGGACGTCGTGTACGCCCTGAAGCGTCAAGGA 242166 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| || ||||| Sbjct 242165 AGAACTCTCTACGGTTTCGGCGGTTAA 242139 >seq4730 Length=3448589 Score = 158 bits (174), Expect = 2e-34 Identities = 197/270 (73%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | ||||| || |||||||| || ||||| ||||| || || Sbjct 3419152 GCTAAGCGTCACAGGAAGGTACTTCGTGACAACATCCAGGGTATCACAAAGCCCGCCATT 3419211 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||||||||||||||| ||||| ||| |||| || ||| | || || || | | Sbjct 3419212 CGTCGTTTGGCTCGTCGTGGTGGTGTCAAACGTATCTCCGGCTTGATTTACGAGGAAACT 3419271 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | ||||| | | ||| || | ||| || || || || ||| Sbjct 3419272 CGTGGTGTGCTGAAAGTATTCCTGGAAAACGTGATTCGTGACGCAGTCACATACACTGAG 3419331 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| ||||| | ||||| |||| ||||| |||| | || || Sbjct 3419332 CACGCCAAACGGAAGACCGTCACAGCTATGGACGTCGTATATGCCCTGAAGAGGCAGGGA 3419391 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || ||||||||| ||||| || Sbjct 3419392 CGCACTTTGTACGGTTTTGGAGGTTAAGCT 3419421 Score = 134 bits (148), Expect = 2e-27 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||| ||||| ||||| || || || | |||| | | ||||| Sbjct 3411255 CGTGATAACATCCAAGGCATCACTAAGCCCGCCATTCGCAGATTGGCAAGAAGAGGTGGC 3411314 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| || || ||| |||| ||||||| || | ||| |||||| | |||||| Sbjct 3411315 GTCAAGCGAATCAGCGGTTTGATCTACGAAGAGACGCGCGGTGTCTTGAAGGTGTTCCTC 3411374 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | |||||||| ||||| | ||| || || ||||| || | |||||||| || Sbjct 3411375 GAAAACGTTATCCGAGATGCCGTTACCTACACTGAACACGCCAAGAGGAAGACTGTAACG 3411434 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||||||| | ||||| || |||||||| || ||| | | | || ||||||||| Sbjct 3411435 GCCATGGACGTTGTCTACGCTTTGAAACGCCAGGGCAGAACTCTCTACGGTTTTGGA 3411491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063680646107