Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq7180 96.9 4e-16 seq6314 95.1 2e-15 >seq7180 Length=2074 Score = 96.9 bits (106), Expect = 4e-16 Identities = 216/324 (67%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 12236 TCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGCTAAATTTT 12295 ||||| ||||| | ||||| | |||||| |||| |||| ||||| ||| ||||||| Sbjct 1496 TCAAAAAATGCTAACGCTACCGCTTCTGGTGATAAACACCATAAATGGTTGCAAAATTTT 1555 Query 12296 TTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTTCCTTTAAA 12355 || ||| | | | | |||||| | || || || | || || |||| || || | Sbjct 1556 TTTAATCCTATATTACTTATTTTTTCGTCAGTAGAACGGTATGCATACAGTTTCTGTAGA 1615 Query 12356 AATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCTTTGATA 12415 ||| ||||| | | ||||||||| | ||| | ||| | ||| ||||| | Sbjct 1616 AATTCCAAATCTTGACGTGGAGCTTCCGCTGCCATCGGAGCTCGAATCCACGCTTTTACG 1675 Query 12416 TACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAATTTCACCGTCATT 12475 || | | || | ||| || ||||| || || ||| ||| ||| || |||| Sbjct 1676 TAAATATTGGCGAGAAAGACGCAAATGTCG----CGAATTCCATTTTCTTCGTCGACATT 1731 Query 12476 T----TGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCA 12531 | | || || || ||||||| ||||||||| ||||| ||||| |||||||| Sbjct 1732 TAACATAAACTGATTTTTAAATAAATATATTTTTAAGCAATATAAAGCTTTCGCCATCCA 1791 Query 12532 CCTAGCGTGGTGGAATGCACCCGG 12555 | |||||||||||| || || || Sbjct 1792 ACGAGCGTGGTGGAAAGCTCCGGG 1815 >seq6314 Length=56999 Score = 95.1 bits (104), Expect = 2e-15 Identities = 223/336 (66%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 12238 AAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGCTAAATTTTTT 12297 ||| ||||| | ||||| | |||||| ||||||||| ||||| ||| ||||||||| Sbjct 45297 AAAAAATGCTAACGCTACTGCTTCTGGTGATAAATACCATAAATGGTTGCAAAATTTTTT 45356 Query 12298 CAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTTCCTTTAAAAA 12357 ||| | | | | ||||| | || || || | || || ||| || || ||| Sbjct 45357 TAATCCTATATTACTTATTTCTTCGTCAGTAGAACGGTATGCATACGGTTTCTGTAGAAA 45416 Query 12358 TGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCTTTGATATA 12417 || ||||| | | ||||||||| | ||| | ||| | ||| ||||| || || Sbjct 45417 TGCCAAATCTTGACATGGAGCTTCCGCTGCCACCGGAGCTCGAATCCACGCTTTTATGTA 45476 Query 12418 CACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAATTTCACCGTCATTT- 12476 | | || | ||| || ||||| || || ||| ||| ||| || ||||| Sbjct 45477 AATATTGGCGAGAAAGACGCAAATGTCG----CGAATTCCATTTTCTTCGTCGACATTTA 45532 Query 12477 ---TGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACC 12533 | || || || ||||||| |||| |||| ||||| ||||| |||||||| | Sbjct 45533 ACATAAACTGATTCTTAAATAAATATATCTTTAAGCAATATAAAGCTTTCGCCATCCAAC 45592 Query 12534 TAGCGTGGTGGAATGCACCCGGTTTTCGAAATTTTA 12569 |||||||||||| || || || |||||| ||| Sbjct 45593 GAGCGTGGTGGAAAGCTCCGGGGGCCCGAAATCTTA 45628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63296377897371