Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq6693 102 2e-17 seq5945 102 2e-17 seq5215 98.7 2e-16 seq4616 93.3 8e-15 seq4177 91.5 3e-14 seq4553 82.4 1e-11 seq7111 80.6 5e-11 >seq6693 Length=826 Score = 102 bits (112), Expect = 2e-17 Identities = 129/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 7917 GCAGACGTGGTAAAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACA 7976 ||| ||| ||||| || ||||| |||| || ||| | | || | ||| | || | Sbjct 267 GCATACG-GGTAAGGGGTTGTTAAACAGAGCTATAAACGCGTTACCGTTCGAATTGCATA 325 Query 7977 TACCAGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTG 8036 |||| |||||||| | ||||||||| ||||| || | | ||| |||||||||| || | Sbjct 326 TACCTGGTTATCAATTCTGCGGTCCTGGTACGAAACTGACGAAGCGATTAGCTCGTGGGG 385 Query 8037 ATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCA 8092 || ||| || ||||| |||||||| || ||| || ||||||||||| || ||| Sbjct 386 ATCGAGGAATCAATCCGTTGGACGCGGCCTGTCGCGAGCACGATATAGCCTATTCA 441 >seq5945 Length=557 Score = 102 bits (112), Expect = 2e-17 Identities = 129/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 7917 GCAGACGTGGTAAAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACA 7976 ||| ||| ||||| || ||||| |||| || ||| | | || | ||| | || | Sbjct 384 GCATACG-GGTAAGGGGTTGTTAAACAGAGCTATAAACGCGTTACCGTTCGAATTGCATA 326 Query 7977 TACCAGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTG 8036 |||| |||||||| | ||||||||| ||||| || | ||||| |||||| ||| || | Sbjct 325 TACCTGGTTATCAATTCTGCGGTCCTGGTACGAAACTGACCAAGCGATTAGATCGTGGGG 266 Query 8037 ATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCA 8092 || ||| || ||||| |||||||| || ||| || ||||||||||| || ||| Sbjct 265 ATCGAGGAATCAATCCGTTGGACGCGGCCTGTCGCGAGCACGATATAGCCTATTCA 210 >seq5215 Length=2228 Score = 98.7 bits (108), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 7917 GCAGACGTGGTAAAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACA 7976 ||| ||| ||||| || ||||| |||| | ||| | | || | ||| | || | Sbjct 2148 GCATACG-GGTAAGGGGTTGTTAAACAGAGCTACAAACGTGTTACCGTTCGAATTGCATA 2090 Query 7977 TACCAGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTG 8036 |||| |||||||| | ||||||||| ||||| || | ||||| |||||| ||| || | Sbjct 2089 TACCTGGTTATCAATTCTGCGGTCCTGGTACGAAACTGACCAAGCGATTAGATCGTGGGG 2030 Query 8037 ATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCA 8092 || ||| || ||||| |||||||| || ||| || ||||||||||| || ||| Sbjct 2029 ATCGAGGAATCAATCCGTTGGACGCGGCCTGTCGCGAGCACGATATAGCCTATTCA 1974 >seq4616 Length=32001 Score = 93.3 bits (102), Expect = 8e-15 Identities = 195/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Plus Query 7198 CTGTCTTTATCTATTACCACAAATCCATATTTATT---CCAACATGCCGAGCATAAATCT 7254 ||||||||||| ||||| | ||||||||| || || |||||| || ||||| | Sbjct 24068 CTGTCTTTATCGATTACGAGAAATCCATACTTCTTTCGCCAACAATTCGCACATAACGCG 24127 Query 7255 CTGAATGAGTTGTATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTC 7314 || || | | | | | ||| || ||||| |||||||| || ||| || || ||| Sbjct 24128 CTAAACGTCTCGAACGACATATCGGTATTTACATGATCCCGATGAATGTGACGCAAGTTC 24187 Query 7315 ATTTCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGT 7374 || |||| ||| |||||| | | | || ||||| || | ||| | || || ||| Sbjct 24188 ATGGCATCCTGATTGAACAGAATCAACAGATTGGCATTGTCGCGAATTAAATGTTTAGGT 24247 Query 7375 ATTCGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAG 7434 |||| | || | |||| || ||||||| || || | | |||| |||||| | Sbjct 24248 ATTCTCGCGTACGACTGACCCAGGTAGAAGCAATCGACGTGCGAATGTCTACCCATCGCG 24307 Query 7435 AAAAAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATAT 7484 ||| | || | ||| |||||| | ||||| || || ||||| || || Sbjct 24308 AAATACTCTCTCATGATATCCTGCTCGTCACACGCCACGTCGTCGAAGAT 24357 >seq4177 Length=11547 Score = 91.5 bits (100), Expect = 3e-14 Identities = 195/291 (67%), Gaps = 3/291 (1%) Strand=Plus/Plus Query 7197 ACTGTCTTTATCTATTACCACAAATCCATATTTATT---CCAACATGCCGAGCATAAATC 7253 |||||||||||| ||||| | |||||| || || || |||||| | |||||| | Sbjct 3531 ACTGTCTTTATCGATTACGAGAAATCCGTACTTCTTTCGCCAACAATTCACGCATAACGC 3590 Query 7254 TCTGAATGAGTTGTATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATT 7313 || || | | | | | ||| || ||||| |||||||| | || ||| || || || Sbjct 3591 ACTAAACGTCTCGAACGACATATCAGTATTTACATGATCCTGATGAATGTGACGCAAGTT 3650 Query 7314 CATTTCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGG 7373 ||| ||| || |||||| | || | || ||||| || | ||| | || || || Sbjct 3651 CATGGTATCCTGTTTGAACAGAATCAGCAGATTGGCATTGTCGCGAATTAAATGTTTAGG 3710 Query 7374 TATTCGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCA 7433 ||||| | || | |||| || ||||||| || || | | |||| |||||| Sbjct 3711 TATTCTCGCGTACGACTGACCCAGGTAGAAGCAATCGACGTGCGAATGTCTACCCATCGC 3770 Query 7434 GAAAAAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATAT 7484 |||| | || | ||| |||||| | ||||| || || ||||| || || Sbjct 3771 GAAATACTCTCTCATGATATCCTGCTCGTCACACGCCACGTCGTCGAAGAT 3821 Score = 80.6 bits (88), Expect = 5e-11 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 7977 TACCAGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTG 8036 |||| |||||||| | ||||||||| || || || | || | |||||||||| || | Sbjct 4771 TACCTGGTTATCAATTCTGCGGTCCTGGCACGAAACTGACCGCGCGATTAGCTCGTGGAG 4830 Query 8037 ATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTA 8088 || ||| || ||||| |||||||| || ||| || ||||||||||| || Sbjct 4831 ATCGAGGAATCAATCCGTTGGACGCGGCCTGTCGCGAGCACGATATAGCCTA 4882 >seq4553 Length=17293 Score = 82.4 bits (90), Expect = 1e-11 Identities = 194/291 (67%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 7197 ACTGTCTTTATCTATTACCACAAATCCATATTTATT---CCAACATGCCGAGCATAAATC 7253 |||||||||||| ||||| | |||||| || || || |||||| | |||||| Sbjct 7106 ACTGTCTTTATCGATTACGAGAAATCCGTACTTCTTTCGCCAACAATTCACGCATAATGT 7165 Query 7254 TCTGAATGAGTTGTATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATT 7313 || || | | | | | ||| || ||||| |||||||| | || ||| || ||| || Sbjct 7166 GCTAAACGTCTCGAACGACATATCGGTATTTACATGATCCTGATGAATGTGACGCAG-TT 7224 Query 7314 CATTTCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGG 7373 ||| ||| || |||||| | || | || ||||| || | ||| | || || || Sbjct 7225 CATGGTATCCTGTTTGAACAGAATCAGCAGATTGGCATTGTCGCGAATTAAATGTTTCGG 7284 Query 7374 TATTCGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCA 7433 ||| | | || | |||| || ||||||| || || | | |||| |||||| Sbjct 7285 TATCCTCGCGTACGACTGACCCAGGTAGAAGCAATCGACGTACGAATGTCTACCCATCGC 7344 Query 7434 GAAAAAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATAT 7484 |||| | || | ||| |||||| | ||||| || || ||||| || || Sbjct 7345 GAAATACTCTCTCATGATATCCTGCTCGTCACACGCCACGTCGTCGAAGAT 7395 >seq7111 Length=1549663 Score = 80.6 bits (88), Expect = 5e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 17594 TTCTGTAAATTTAATATAAATCTTTTGGAGCCATCTGGTTTTTCTCTCAGGAAATAACTA 17653 |||| |||||||||||||||||| |||||||||||||||||| | |||||||| ||| Sbjct 962132 TTCTTTAAATTTAATATAAATCTGCATGAGCCATCTGGTTTTTCTTTGAGGAAATAGCTA 962191 Query 17654 GAGAGGAACTGATC 17667 || | || ||||| Sbjct 962192 GATAAAAATTGATC 962205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97959741743846