Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11430 147 3e-30 seq6000 140 4e-28 >seq11430 Length=555723 Score = 147 bits (162), Expect = 3e-30 Identities = 237/339 (70%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 ||||||||||||| || || | ||| || ||| |||||||| || ||||||||||| | Sbjct 42899 TACCGATAGGTCTGTGCCTTTGATTGGATCTTTTTGCTTCTGGGATTGGATAATAATTGA 42958 Query 62797 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62856 | || || | ||||| || ||||| || |||||| ||| |||||||| || | Sbjct 42959 TGTCGATTACGTTATTCAGGTTTCTAGTAACTACTTTAGTCACTTCCTTCAGCTTTTCGA 43018 Query 62857 AATC--AAATCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAAC 62914 |||| || | | | | |||| ||||| || | ||||| || |||| ||||| || Sbjct 43019 AATCGAAAGTTTTCGAGC--TTACGAACATATTGACGGCAATCGAAGCCAAGTTACATAC 43076 Query 62915 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 62974 || || |||| | | | |||||||| || || ||||| | |||||||| || || Sbjct 43077 AGCAACTTCATCCGGACTAGAATATTGTACGATTTCGGTGCACAAGTTACTACATTTTAT 43136 Query 62975 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63034 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 43137 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 43196 Query 63035 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63073 ||| |||||||| | || ||| | | ||| || |||| Sbjct 43197 AGTTCCAGTTTCTACTTGTGATACGAGAATAGCAGTCCA 43235 Score = 134 bits (148), Expect = 2e-26 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| || || ||| || ||| |||| ||| || || || || | ||| | | ||| Sbjct 42044 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCGTCCCAGAGATCTCT 42103 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 || |||||| ||| || | ||| ||||| || ||||| |||||||| || | ||||| Sbjct 42104 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTGGAATTCTCCGGAGAGTACTCG 42163 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || || || ||||| || || || || | ||||||||| ||||| |||||||| || Sbjct 42164 CCTTACATATATGTTACTAGTGTAAGGCTCGATCGACTCATTGTTTCCTAAAATTTGCGC 42223 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 ||| || || ||||||||||| || | ||||| | |||||||| || | | | | || Sbjct 42224 AGTCGAAGCTGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTAT 42283 Query 62483 TTTATCTTTTAG 62494 ||| ||||| || Sbjct 42284 TTTTTCTTTCAG 42295 >seq6000 Length=2059021 Score = 140 bits (154), Expect = 4e-28 Identities = 182/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| || || ||| || ||| |||| ||| || || || |||| ||| | | ||| Sbjct 208895 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCATCCCAGAGATCTCT 208836 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 || |||||| ||| || | ||| ||||| || |||| || |||||| || ||||| Sbjct 208835 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTCAATTTCTCCGGAGGGTACTCG 208776 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || || | ||||| || || ||||| ||||||||||| ||||| |||||||| || Sbjct 208775 CCTTACATATGTGTTACTAGTGTAAGGTTCGACCGACTCATTGTTTCCTAAAATTTGCGC 208716 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 ||| || |||||||||||||| || | ||||| | |||||||| || | | | | || Sbjct 208715 AGTCGAAGCAGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTAT 208656 Query 62483 TTTATCTTTTAG 62494 ||| ||||| || Sbjct 208655 TTTTTCTTTCAG 208644 Score = 134 bits (148), Expect = 2e-26 Identities = 218/312 (70%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 ||||||||||||| || || | ||| || | | |||||||| || ||||||||||| | Sbjct 208024 TACCGATAGGTCTGTGCCTTTGATTGGATTTCTTTGCTTCTGGGATTGGATAATAATTGA 207965 Query 62797 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62856 | ||||| | |||| || ||||| || |||||| ||| | ||| || || | Sbjct 207964 TGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTCTTTAGCTTTTCGA 207905 Query 62857 AATC--AAATCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAAC 62914 |||| || | | | | |||||||||| || | ||||| || |||| |||||| | Sbjct 207904 AATCGAAAGTTTTCGAGC--TTACAAACATATTGACGGCAATCGAAGCCAAATTACATGC 207847 Query 62915 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 62974 || || |||| | | | |||||||| || || ||||| | |||||||| || || Sbjct 207846 AGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTGCAGAAGTTACTACATTTTAT 207787 Query 62975 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63034 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 207786 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 207727 Query 63035 AGTACCAGTTTC 63046 ||| |||||||| Sbjct 207726 AGTTCCAGTTTC 207715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622849093602840