Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7268 111 1e-19 seq6000 84.2 2e-11 seq4730 82.4 7e-11 >seq7268 Length=409911 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||||||| | ||||| | ||||| |||||| | Sbjct 283708 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAAACTATTACATTGGAAGTTGAGGCCTCC 283767 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || || || ||| |||||||| || || ||||| || || Sbjct 283768 GACACAATTGAGAATGTAAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCAGACCAG 283827 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||| || ||||||| | | | | || || || Sbjct 283828 CAGAGGTTGATCTTCGCCGGTAAGCAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 283887 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 |||||||||||||| || ||||| Sbjct 283888 ATTCAAAAAGAATCCACTCTTCAT 283911 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | || || ||| | || || | ||||| || ||| | Sbjct 286672 ATGCAAATTTTTGTAAAGACCCTCACGGGGAAAACAATAACGCTGGAAGTTGAAGCCTCC 286731 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | ||||| || ||| ||||||||||| || || || ||||| Sbjct 286732 GATACTATTGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 286791 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | || ||| || || |||||||||| | | | | || || || Sbjct 286792 CAGAGATTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 286851 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||||||||| || Sbjct 286852 ATTCAAAAAGAATCCAC 286868 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || | ||||| | ||||| ||||| | Sbjct 286216 ATGCAAATTTTTGTGAAGACTCTCACTGGCAAGACTATTACTTTAGAAGTTGAGGCTTCC 286275 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || |||||| | || || ||||||| || ||||| ||||| || || || || Sbjct 286276 GATACTATCGAGAATGTGAAGGCAAAGATTCAGGATAAAGAGGGCATCCCACCAGACCAG 286335 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGCGATTATAA 24169 ||||| |||| | || || || || || ||||||| | | | || | | || || || Sbjct 286336 CAGAGGTTGATCTTCGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCG-GACTACAA 286394 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||||||||| ||||| || ||||| Sbjct 286395 CATTCAAAAGGAATCCACTCTTCAT 286419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||||||| | || || | || ||||||||| | Sbjct 282340 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAAACAATAACTCTGGAGGTCGAGGCCTCC 282399 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || || || ||| ||||||||||| || || || ||||| Sbjct 282400 GACACAATTGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAG 282459 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| || || |||||||||| | | | | || || || Sbjct 282460 CAGAGGTTGATCTTTGCCGGTAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 282519 Query 24171 ATTCAAAAAGAATCTACA 24188 |||||||| || |||||| Sbjct 282520 ATTCAAAAGGAGTCTACA 282537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || ||| | || || | ||||| ||||| | Sbjct 283252 ATGCAAATTTTTGTTAAGACCCTTACAGGTAAAACAATAACGCTGGAAGTTGAGGCATCC 283311 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || ||| ||||||||||| || || || || ||| Sbjct 283312 GATACTATAGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAA 283371 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||||| || |||||||||| | | | | || || || Sbjct 283372 CAGAGGTTGATCTTCGCAGGCAAACAGCTCGAAGATGGCCGTACACTTTCTGACTACAAT 283431 Query 24171 ATTCAAAAAGAATCTACA 24188 |||||||| || |||||| Sbjct 283432 ATTCAAAAGGAGTCTACA 283449 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || || ||||| ||||||||| | || ||| | || || || || Sbjct 282109 AATATGCAGATCTTCGTTAAGACATTGACTGGAAAAACAATAACCTTAGAGGTTGAAGCA 282168 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| || || | || || ||| ||| ||||||||||| || || || ||| Sbjct 282169 TCAGACACAATTGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGAT 282228 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTA 24166 || ||||| |||| | || ||| || || || |||||| ||| | || | || || Sbjct 282229 CAGCAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGATGGACGCACAC-TTTCTGACTA 282287 Query 24167 TAACATTCAAAAAGAATCTACAATTCAT 24194 || |||||||| || |||||| | ||| Sbjct 282288 CAATATTCAAAAGGAGTCTACACTGCAT 282315 >seq6000 Length=2059021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 188/279 (67%), Gaps = 14/279 (5%) Strand=Plus/Minus Query 132662 GGATAAAAGTTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTA 132721 |||||| | || ||||||||| |||| || || |||| || ||| ||| |||||| Sbjct 207977 GGATAATAATTGATGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTC 207918 Query 132722 TATAGCGATTCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCAAAACAATTGACGGCAATC 132781 | |||| ||| || || || |||| | ||| |||| ||||||||||||| Sbjct 207917 TTTAGCTTTTCGAAATCGAAAGTTTTCGAGCTTA------CAAACATATTGACGGCAATC 207864 Query 132782 GAGGCCAAATTGCATACGGCTGTCTCTTTATTATCGCT---ATACTGTACGATTTCTGCA 132838 || |||||||| ||| || | ||| || || ||| ||||| ||||||| Sbjct 207863 GAAGCCAAATTACAT---GCAGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTG 207807 Query 132839 CACAAATTACTGTTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTAC-GTT 132897 || || ||||| | || ||| | |||| ||||| | || || |||| | Sbjct 207806 CAGAAGTTACTACATTTTATTGTTCCTATATTTTGGTGATT-TGATTTACGATTACAATG 207748 Query 132898 ATCTTTATGCAACATGTACGGACCTCCGGTTTCGACCTG 132936 |||||||| ||||||||| ||| ||| ||||| || || Sbjct 207747 ATCTTTATACAACATGTAAGGAGTTCCAGTTTCTACTTG 207709 >seq4730 Length=3448589 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| | || ||||| | || ||| | ||||| || || Sbjct 2520569 AATGCAGATCTTTGTCAAAACGCTTACAGGAAAGACCATCACCCTGGAAGTTGAAGCTTC 2520510 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || ||| |||||| || || ||||| || ||||||||||| Sbjct 2520509 AGATACGATAGAGAACGTGAAAGCCAAGATTCAAGATAAGGAAGGTATTCCTCCCGATCA 2520450 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||| | | || || || | ||||||| |||| | | ||| ||||| Sbjct 2520449 GCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGAACCCTTTCCGACTATAA 2520390 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || || || ||||| | ||||| || || Sbjct 2520389 TATACAGAAGGAGTCTACTCTGCATTTGGTCTT 2520357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429869983192845