Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11430 141 1e-28 seq6000 134 2e-26 >seq11430 Length=555723 Score = 141 bits (156), Expect = 1e-28 Identities = 236/339 (70%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 ||||||||||||| || || | ||| || ||| |||||||| || ||||||||||| | Sbjct 42899 TACCGATAGGTCTGTGCCTTTGATTGGATCTTTTTGCTTCTGGGATTGGATAATAATTGA 42958 Query 62652 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62711 | || || | ||||| || ||||| || |||||| ||| |||||||| || | Sbjct 42959 TGTCGATTACGTTATTCAGGTTTCTAGTAACTACTTTAGTCACTTCCTTCAGCTTTTCGA 43018 Query 62712 AATC--AAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAAC 62769 |||| || | | | | |||| ||||| || | |||| || |||| ||||| || Sbjct 43019 AATCGAAAGTTTTCGAGC--TTACGAACATATTGACGGCAATCGAAGCCAAGTTACATAC 43076 Query 62770 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 62829 || || |||| | | | |||||||| || || ||||| | |||||||| || || Sbjct 43077 AGCAACTTCATCCGGACTAGAATATTGTACGATTTCGGTGCACAAGTTACTACATTTTAT 43136 Query 62830 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 62889 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 43137 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 43196 Query 62890 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 62928 ||| |||||||| | || ||| | | ||| || |||| Sbjct 43197 AGTTCCAGTTTCTACTTGTGATACGAGAATAGCAGTCCA 43235 Score = 131 bits (144), Expect = 2e-25 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 ||| || || ||| || ||| |||| ||| || || || || | ||| | | ||| Sbjct 42044 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCGTCCCAGAGATCTCT 42103 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 || |||||| ||| || | ||| ||||| || ||||| |||||||| || | ||||| Sbjct 42104 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTGGAATTCTCCGGAGAGTACTCG 42163 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || || || ||||| || || || || | |||||||| ||||| |||||||| || Sbjct 42164 CCTTACATATATGTTACTAGTGTAAGGCTCGATCGACTCATTGTTTCCTAAAATTTGCGC 42223 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 ||| || || ||||||||||| || | ||||| | |||||||| || | | | | || Sbjct 42224 AGTCGAAGCTGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTAT 42283 Query 62338 TTTATCTTTTAG 62349 ||| ||||| || Sbjct 42284 TTTTTCTTTCAG 42295 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 62465 TCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT 62524 |||||||| || ||||| ||||||||||| | ||||| || |||| |||| || | Sbjct 42698 TCACAACTTGCTTCTAAGGCACCGTAATATAGTGTTTCAAATATCTGAATATTCAGTTTC 42757 Query 62525 TGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 62584 |||||||| ||| ||||| |||||| | | || ||||| || || | |||||| Sbjct 42758 TGCGCTTCTTCGCTTTCAAACGGATAACGCATCAAAAGGAACGCATCAGCAAGTCCTTGC 42817 Query 62585 ACACCAATACC 62595 || |||||||| Sbjct 42818 ACGCCAATACC 42828 >seq6000 Length=2059021 Score = 134 bits (148), Expect = 2e-26 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 ||| || || ||| || ||| |||| ||| || || || |||| ||| | | ||| Sbjct 208895 CTGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCATCCCAGAGATCTCT 208836 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 || |||||| ||| || | ||| ||||| || |||| || |||||| || ||||| Sbjct 208835 TTCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTCAATTTCTCCGGAGGGTACTCG 208776 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || || | ||||| || || ||||| || |||||||| ||||| |||||||| || Sbjct 208775 CCTTACATATGTGTTACTAGTGTAAGGTTCGACCGACTCATTGTTTCCTAAAATTTGCGC 208716 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 ||| || |||||||||||||| || | ||||| | |||||||| || | | | | || Sbjct 208715 AGTCGAAGCAGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTAT 208656 Query 62338 TTTATCTTTTAG 62349 ||| ||||| || Sbjct 208655 TTTTTCTTTCAG 208644 Score = 129 bits (142), Expect = 7e-25 Identities = 217/312 (70%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 ||||||||||||| || || | ||| || | | |||||||| || ||||||||||| | Sbjct 208024 TACCGATAGGTCTGTGCCTTTGATTGGATTTCTTTGCTTCTGGGATTGGATAATAATTGA 207965 Query 62652 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62711 | ||||| | |||| || ||||| || |||||| ||| | ||| || || | Sbjct 207964 TGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTCTTTAGCTTTTCGA 207905 Query 62712 AATC--AAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAAC 62769 |||| || | | | | |||||||||| || | |||| || |||| |||||| | Sbjct 207904 AATCGAAAGTTTTCGAGC--TTACAAACATATTGACGGCAATCGAAGCCAAATTACATGC 207847 Query 62770 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 62829 || || |||| | | | |||||||| || || ||||| | |||||||| || || Sbjct 207846 AGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTGCAGAAGTTACTACATTTTAT 207787 Query 62830 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 62889 ||||||| |||||| ||||| || ||||| ||| ||||| | ||| | || Sbjct 207786 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 207727 Query 62890 AGTACCAGTTTC 62901 ||| |||||||| Sbjct 207726 AGTTCCAGTTTC 207715 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 62465 TCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT 62524 |||||||| || ||||| ||||||||||| | ||||| || |||| |||| || | Sbjct 208225 TCACAACTTGCTTCTAAGGCACCGTAATACAGTGTTTCAAATATCTGAATATTCAGTTTC 208166 Query 62525 TGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 62584 |||||||| ||| ||||| |||||| | | || ||||| || || | |||||| Sbjct 208165 TGCGCTTCTTCGCTTTCAAACGGATAACGCATCAAAAGGAACGCATCAGCAAGTCCTTGC 208106 Query 62585 ACACCAATACC 62595 || |||||||| Sbjct 208105 ACGCCAATACC 208095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633532210880400