Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6274 120 3e-22 seq4970 118 1e-21 seq4776 114 1e-20 seq9021 82.4 8e-11 >seq6274 Length=757356 Score = 120 bits (132), Expect = 3e-22 Identities = 80/88 (91%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| | |||||||| | |||||| Sbjct 208108 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTTTGGTTCCCGTTAGGGAGC 208049 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||| ||||| Sbjct 208048 GTGGGTTCGAACCCCACACCTGGCAAAT 208021 >seq4970 Length=98340 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || ||||||||||| |||| |||||||||||| || |||||||| ||||| |||| ||| Sbjct 66054 ATATATGTATCGATCAACAAAGAATACATTTCTGAGTGGACATTTTCCATAGCAACCTGG 66113 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || || || | || || || | || || |||||| || || ||||| ||| Sbjct 66114 AAACCATAAAAGCAGCGTGCCTCTGTAACTTGGACCTCTTGACTGAACCTTTCTACAAGA 66173 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || ||||| || ||||| || || || || || || || | || ||| ||||| Sbjct 66174 TTCTCGTTGACAATTCCATCAGAAGCAGCGAAGAATGCTAACACGTGAGATATGAAATGC 66233 Query 93542 TTCTC 93546 ||||| Sbjct 66234 TTCTC 66238 >seq4776 Length=770842 Score = 114 bits (126), Expect = 1e-20 Identities = 90/105 (86%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 756989 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 757048 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGC 126371 ||||||||||||||| | |||| | || || ||||| |||| Sbjct 757049 GTTCGAACCCCACACTTAGCAAAATCTTTTTTTTATTTTATTTGC 757093 Score = 113 bits (124), Expect = 5e-20 Identities = 81/91 (89%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 758095 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGTTCTGGTTCCCGTCTGGGAGCGTGG 758154 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||| | || || Sbjct 758155 GTTCGAACCCCACACTTAGCAAAATCTTTTT 758185 Score = 111 bits (122), Expect = 2e-19 Identities = 76/83 (92%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 757881 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 757940 Query 126327 GTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||| | |||| Sbjct 757941 GTTCGAACCCCACACTTAGCAAA 757963 >seq9021 Length=898580 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 162724 AAACATACATATaaaaaaaTCAGAATTACCTCTTGTGAGAATCGAACTCACGACAACCGG 162783 ||| | | || |||||||| | ||||| |||| |||||| || ||||||||||| | || Sbjct 245931 AAAAAAAAATTTAAAAAAA-CTGAATTGCCTCCTGTGAGGATTGAACTCACGACCCCTGG 245989 Query 162784 CGTATAAGACCGATGCTCTAACCACTGAGCTAAAGAGGC 162822 || ||||| |||||| ||||||||||||||||||| Sbjct 245990 TTTACGAGACCAGTGCTCT-ACCACTGAGCTAAAGAGGC 246027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556773101384760