Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq7268 116 3e-21 seq4730 100 2e-16 >seq7268 Length=409911 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||||||| | || || ||||| ||||| ||||| || ||| | Sbjct 284848 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACTATTACATTGGAAGTAGAGGCCTCT 284907 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||||| || ||||||||| | ||| | |||| Sbjct 284908 GACACAATTGAGAATGTAAAGGCAAAAATTCAAGACAAAGAGGGTATTCCTCCAGACCAG 284967 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 ||||| | ||||| || || ||||| || |||||| | | ||| | | || |||| Sbjct 284968 CAGAGGTTGATCTTCGCCGGTAAACAGCTTGAAGATGGTCGCACACTTT--CTGACTACA 285025 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 |||||||||||||||| ||||||||| | ||| Sbjct 285026 ATATTCAGAAGGAATCCACTCTTCATCTTGTA 285057 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || || |||||||| || ||||| || ||| | Sbjct 283480 ATGCAAATTTTTGTTAAGACCCTTACCGGAAAAACCATAACGTTGGAAGTAGAGGCCTCT 283539 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| ||||||| ||||||||||| | || | | ||| Sbjct 283540 GATACAATTGAGAACGTCAAGTCAAAAATTCAGGATAAAGAGGGAATCCCACCAGAACAA 283599 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| || || || || || |||||| | || | |||| |||||| Sbjct 283600 CAGAGATTGATCTTCGCCGGGAAGCAGCTTGAAGATGGCCACACACTTTCCGACTACAAT 283659 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||| || ||| | ||| ||||| | || ||||| Sbjct 283660 ATTCAGAAGGAATCTACACTGCATCTTGTACTACGTCTTCGCGGAGG 283706 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || ||||| ||||| ||||| || ||| | Sbjct 283708 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAAACTATTACATTGGAAGTTGAGGCCTCC 283767 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || ||||||||| | ||| | |||| Sbjct 283768 GACACAATTGAGAATGTAAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCAGACCAG 283827 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||| || || || || || |||||| || | | || |||||| Sbjct 283828 CAGAGGTTGATCTTCGCCGGTAAGCAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 283887 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| ||||||||| | ||| | ||| | || || || Sbjct 283888 ATTCAAAAAGAATCCACTCTTCATCTTGTACTTCGTCTCCGTGGTGG 283934 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || | || || ||||| ||||| ||||| || ||| | Sbjct 285076 ATGCAAATTTTCGTTAAGACTCTGACTGGTAAAACTATTACATTGGAAGTAGAGGCCTCT 285135 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||||| |||||||| || | || | || Sbjct 285136 GACACAATTGAGAATGTGAAGGCAAAAATTCAGGATAAAGAAGGGATCCCCCCGGAACAG 285195 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | |||||||| || || || || |||||| | || | ||||||||||| Sbjct 285196 CAGAGATTGATCTTTGCCGGGAAGCAGCTTGAAGATGGCCACACGCTCTCCGATTACAAT 285255 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 ||||| |||||||| ||||| ||| | ||||| || Sbjct 285256 ATTCAAAAGGAATCCACTCTCCATCTTGTATTGCG 285290 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| |||||| | || || ||| |||||| | ||||| || || ||||| || ||| Sbjct 285853 GATAAGGAGGGTATCCCCCCAATCCAGCAGAGATTAATCTTCGCGGGAAAACAGCTTGAA 285912 Query 21987 GAT--TTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTAT 22044 ||| | | ||| | ||||||||||||||||||||||||| ||||||||| | ||| Sbjct 285913 GATGGTCGCACACTTT--CCGATTACAATATTCAGAAGGAATCCACTCTTCATCTTGTAC 285970 Query 22045 TACGTTTACGAGGAGG 22060 | ||| | || || || Sbjct 285971 TTCGTCTCCGCGGTGG 285986 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || | || || ||||| || || |||| ||||| | Sbjct 282796 ATGCAAATTTTCGTTAAGACCCTTACAGGAAAAACAATAACTCTGGAGGTTGAAGCGTCT 282855 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | | | ||| |||||| || ||||| ||| | ||||| | Sbjct 282856 GACACGATAGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCACCTG---AT 282912 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| | ||||| ||||||||||| || |||||| | ||| | | |||||| Sbjct 282913 CAGCAGAGGTTGATCTTCGCTGGCAAACAGCTTGAAGATGGACGAACGCTTTCTGATTAC 282972 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || ||||| || ||| | ||| | || | |||||||| Sbjct 282973 AATATTCAGAAAGAGTCTACACTGCATCTTGTACTGCGGCTTCGAGGAGG 283022 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || || ||||| ||||| ||||| || ||| | Sbjct 284392 ATGCAAATTTTTGTTAAGACTCTCACCGGTAAAACTATTACATTGGAAGTTGAGGCCTCC 284451 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| || ||||| || | || | | || Sbjct 284452 GATACTATTGAGAATGTAAAGGCGAAAATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 284511 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | |||||||| |||||||| || |||||| | || | | || |||||| Sbjct 284512 CAGAGATTAATCTTTGCGGGCAAACAGCTTGAAGATGGACGCACGCTTTCAGACTACAAT 284571 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||| |||||||| ||||| ||| | ||| Sbjct 284572 ATTCAAAAGGAATCCACTCTCCATCTTGTA 284601 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || | || || ||||| ||||| ||||| || ||| | Sbjct 285532 ATGCAAATTTTCGTTAAGACCCTGACTGGTAAAACTATTACATTGGAAGTAGAGGCCTCT 285591 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||| ||| ||||||||||| |||| | |||| Sbjct 285592 GACACTATTGAGAATGTGAAGGCAAAGATTCAGGATAAAGAGGGAATACCACCAGACCAG 285651 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||| ||||| ||||| || |||||| || | | || |||||| Sbjct 285652 CAGAGGTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 285711 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||| ||||| ||||| || ||| | ||| Sbjct 285712 ATTCAAAAGGAGTCTACACTGCATCTTGTA 285741 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || ||||| || || |||| ||||| || || ||||| || ||| | || ||||| Sbjct 282109 AATATGCAGATCTTCGTTAAGACATTGACTGGAAAAACAATAACCTTAGAGGTTGAAGCA 282168 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 |||| || | | || ||||| ||||||| || ||||| ||| | || | | Sbjct 282169 TCAGACACAATTGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGAT 282228 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| | ||||| || || ||||| || |||||| | || | | || ||| Sbjct 282229 CAGCAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGATGGACGCACACTTTCTGACTAC 282288 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 |||||||| ||||| ||||| || ||| | ||| Sbjct 282289 AATATTCAAAAGGAGTCTACACTGCATCTTGTA 282321 >seq4730 Length=3448589 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | |||||| | || || || ||||| ||| |||| ||||| | Sbjct 2520341 AATGCAAATCTTCGTGAAAACACTCACAGGAAAGACCATCACCCTGGAGGTTGAAGCTTC 2520282 Query 21893 AGAAACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 ||| ||| | | || | | |||| || | || ||||| || || | ||| | | Sbjct 2520281 AGATACGATAGA-GAACGTGAAAGCCAAGA-TTCAAGATAAGGAAGGAATTCCTCCAGAT 2520224 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | | ||||||||||| |||||| ||||||| || ||| | |||| || Sbjct 2520223 CAGCAGCGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGAAGAACACTTTCCGACTAT 2520164 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||| || |||||||| |||| || ||| | || |||||| Sbjct 2520163 AATATACAGAAGGAGTCCACTCTTCACTTGGTCTTGCGTCTTCGCGGAGGA 2520113 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | |||||| | || || || ||||| ||| |||| ||||| | Sbjct 2520797 AATGCAAATCTTCGTGAAAACACTCACAGGAAAGACCATCACCTTGGAGGTTGAAGCTTC 2520738 Query 21893 AGAAACGGTGGCCGATCTTAA--GCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 ||| ||| | | || | ||| || || | || ||||| || || | ||| | | Sbjct 2520737 AGATACGATAGA-GAACGTAAAAGCCAAGA-TTCAAGATAAGGAAGGAATTCCTCCAGAT 2520680 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | | ||||||||||| |||||| |||||||| | |||| | |||| || Sbjct 2520679 CAGCAGCGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACTCTTTCCGACTAT 2520620 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || |||||||| || |||||||| |||| || ||| | || |||||| Sbjct 2520619 AACATCCAGAAGGAGTCCACTCTTCACTTGGTCTTGCGTCTTCGCGGAGGA 2520569 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | ||||| | || || || ||||| ||| ||||| ||||| | Sbjct 2521025 AATGCAGATCTTTGTCAAAACTCTGACAGGGAAGACCATCACCCTGGAAGTTGAAGCTTC 2520966 Query 21893 AGAAACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 ||| ||| | | || | | |||| || | || ||||| || || | || | | Sbjct 2520965 AGATACGATAGA-GAACGTGAAAGCCAAGA-TTCAAGATAAGGAAGGAATTCCACCAGAT 2520908 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | | ||||||||||| |||||| |||||||| | |||| | |||| || Sbjct 2520907 CAGCAGCGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACTCTTTCCGACTAT 2520848 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||| |||||||| ||| |||| || || | || |||||| Sbjct 2520847 AATATACAGAAGGAGTCTACTCTGCATTTGGTCTTGCGACTTCGCGGAGGA 2520797 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | ||||| | || || || ||||| ||| ||||| ||||| | Sbjct 2520569 AATGCAGATCTTTGTCAAAACGCTTACAGGAAAGACCATCACCCTGGAAGTTGAAGCTTC 2520510 Query 21893 AGAAACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 ||| ||| | | || | | |||| || | || ||||| || ||| | ||| | Sbjct 2520509 AGATACGATAGA-GAACGTGAAAGCCAAGA-TTCAAGATAAGGAAGGTATTCCTCCCGAT 2520452 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| || | ||||||||||| ||||| | |||||| | ||| | |||| || Sbjct 2520451 CAGCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGAACCCTTTCCGACTAT 2520392 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||| |||||||| ||| |||| || || | || || ||| Sbjct 2520391 AATATACAGAAGGAGTCTACTCTGCATTTGGTCTTGCGACTTCGCGGTGGA 2520341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | ||||| | || || || ||||| ||| |||| ||||| | Sbjct 2520113 AATGCAGATCTTTGTCAAAACTCTGACAGGAAAGACCATCACCCTGGAGGTTGAAGCTTC 2520054 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | || | ||| || ||| ||||| || || | ||| | | || Sbjct 2520053 AGATACGATAGAGAATGTAAAGGCCAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 2519994 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || | | ||||||||||| |||||| ||||||| || ||| | | || ||||| Sbjct 2519993 GCAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGAAGAACCCTTTCTGACTACAA 2519934 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || |||||||| || || || |||| || ||| |||| || ||| Sbjct 2519933 CATCCAAAAGGAATCCACCCTCCACTTGGTCTTGCGTCTACGCGGGGGA 2519885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358069809825046