Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq3527 105 2e-18 >seq3527 Length=1401 Score = 105 bits (116), Expect = 2e-18 Identities = 432/667 (65%), Gaps = 22/667 (3%) Strand=Plus/Plus Query 10315 GAGTTGCTTCGTGCTAAGGCTGCCCAGCTGGGGGTAAGCAGTGCTGCAGAAGTGTATATC 10374 ||| |||| ||| |||||| || || ||||| || ||| ||| || || | || | Sbjct 449 GAGATGCTGCGTTTTAAGGCCGCTCAACTGGGCGTCAGCGATGCCGCCGATATCTACCTG 508 Query 10375 CGCAAAATGGA-GCAGGCAGGAAAAGCCACGCATTCGCTGGGTCTGAAAAGTGCAGCGGC 10433 ||||| ||| |||| | || || ||| | ||| | | ||||||| | || || Sbjct 509 CGCAAGCTGGCCGCAG-CGGGGAATGCCTCCCATCACTTCAGCCTGAAAACCACGGCAGC 567 Query 10434 CCGCCAGGAGATAGGCGTTCTGATAGGTGAACTGGCCCGCGGCAATTTAGGGGCGCTGAG 10493 |||| |||| | ||||| || | || ||| |||| | ||| || | || | || | Sbjct 568 GCGCCGGGAGCTGGGCGTGATGCTGGGCGAATTGGCGAGAGGCGATCTGGGCTCCCTTCG 627 Query 10494 GGGATCCGGGATAACGCTGGCTAACCGTGCCGGATGGATAGACACA-CTGATGTCACCGA 10552 || ||||| || || ||||| || ||| |||| ||| || ||| || ||| | | | Sbjct 628 TGGCTCCGGTATCACCCTGGCAAATCGTTCCGGCCTGATTGA-ACAGCTCATGACCCTGC 686 Query 10553 AAGGCATGATGCTGGGCGGGGTTATTGGCGGTATTGCCGCAGCTGTCTATGGTCTGGGTA 10612 || | | | |||||| || ||||||||||||| || ||||||| ||||| | Sbjct 687 GGGGACTTGCGATAACCGGGGTGATCGGCGGTATTGCCGGTGCGCTCTATGGCCTGGGCA 746 Query 10613 AAGCCTGGTATGACGGTCAGAAGGAGGGGGAAGAATTTAACCGCCAGCTGTCGCTGACGG 10672 ||||||||||| | ||| |||| | || ||||| || ||| || || |||| Sbjct 747 AAGCCTGGTATCAGGGTTCACAGGAAGCGGTTGAATTCAATAAGCAGATGATCCTCACGG 806 Query 10673 GGCATTATGCCGGAGTCACTGCCGGGCAGCTG----TGGACGCTCAGTCGTGCTATTTCC 10728 | || ||||||| || |||| ||||| || || | | | | ||| Sbjct 807 GTCACCATGCCGGTAAAACGGCCGCCGAGCTGCAGCTGATGGCAAAAT----CCCTGTCC 862 Query 10729 GGGAATGGTATCACGCAACATGCTGCAGCCGGTGCGCTGGCTCAGGTGGTGGGGAGTGGT 10788 || || || | || || ||| || | ||||||| | |||||||| || Sbjct 863 GGCAACGGGGTAACACAGCATAGCCTTGCTGAAACGCTGGCGAAAGTGGTGGG--GTCAG 920 Query 10789 GCA-TTTC-GTGGAAACGATATCGGTATGGT-GGCGAGAGCTGCCGCACAGATGGA--GC 10843 ||| |||| | |||| ||||| ||| | | ||| | | ||||| || | | | Sbjct 921 GCAGTTTCTCAAGCAACGCCATCGGCATGATCGCCGATA-CCGCCGCTAAGCTAAAAGCC 979 Query 10844 GATCGGTTGGCCAGTCGGTCAGCGATACCATAAGTCAGTTTAAGCGGCTGAAGGATGATC 10903 || || || |||||||| || ||||| | ||||||||| || | || |||| Sbjct 980 CAT--GTCGGGCAGTCGGTTGATGAAACCATCAATCAGTTTAAACGCTTTCAGACGGATC 1037 Query 10904 CTGTAAATGCCGCGAAGGCTCTGGACAATGAGCTGCATTTTCTTACTGCCACTCAGCTTG 10963 | || | |||| | | ||||| || |||||||||||| || || || || |||| Sbjct 1038 CGGTGCAGGCCGTTACCGAGCTGGATAAATCGCTGCATTTTCTGACCGCGACACAACTTG 1097 Query 10964 AGCAGAT 10970 ||||||| Sbjct 1098 AGCAGAT 1104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150323106324954